{"id":24493664,"url":"https://github.com/g-eoj/talisman-test-suite-image-processing","last_synced_at":"2025-03-15T04:09:21.883Z","repository":{"id":150177854,"uuid":"112042520","full_name":"g-eoj/talisman-test-suite-image-processing","owner":"g-eoj","description":"Convert 16 bit tiffs of CT scans in Hounsfield Units to RGB jpgs.","archived":false,"fork":false,"pushed_at":"2017-11-26T00:16:03.000Z","size":2,"stargazers_count":2,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"master","last_synced_at":"2025-01-21T19:44:10.024Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/g-eoj.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2017-11-25T23:47:02.000Z","updated_at":"2021-04-10T12:32:56.000Z","dependencies_parsed_at":null,"dependency_job_id":"ef339f7f-2fc1-4719-b807-64a5cf376d5d","html_url":"https://github.com/g-eoj/talisman-test-suite-image-processing","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/g-eoj%2Ftalisman-test-suite-image-processing","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/g-eoj%2Ftalisman-test-suite-image-processing/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/g-eoj%2Ftalisman-test-suite-image-processing/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/g-eoj%2Ftalisman-test-suite-image-processing/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/g-eoj","download_url":"https://codeload.github.com/g-eoj/talisman-test-suite-image-processing/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":243681076,"owners_count":20330156,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-01-21T19:42:37.484Z","updated_at":"2025-03-15T04:09:21.857Z","avatar_url":"https://github.com/g-eoj.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Talisman Test Suite Image Processing\nConvert and categorize Talisman Test Suite images.\nRequires Python3, OpenCV, and Numpy.\n\nThe Talisman Test Suite consists of CT scan patches of Interstitial Lung Disease(ILD).\nThe patches are saved as 16 bit tiffs and use Hounsfield Units(HU).\n\n### Convert HU to RGB\nIn HUtoRGB.py set the following variables to the HU values you want to correspond to each RGB color channel:\n```\nminR, maxR, minG, maxG, minB, maxB\n```\n\nThe converted images are saved as jpgs in a new directory. The input and output directory paths can be changed from their defaults:\n```\ninputDir = './ILD_DB_talismanTestSuite/'\noutputDir = './converted/'\n```\n\n### Categorize by Disease\nAfter running HUtoRGB.py, place and run catagorize.sh in the new 'converted' directory. \nThe images will be moved to subdirectories with disease names.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fg-eoj%2Ftalisman-test-suite-image-processing","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fg-eoj%2Ftalisman-test-suite-image-processing","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fg-eoj%2Ftalisman-test-suite-image-processing/lists"}