{"id":17122058,"url":"https://github.com/gavinsimpson/permute","last_synced_at":"2025-04-11T16:40:08.408Z","repository":{"id":20714991,"uuid":"23998996","full_name":"gavinsimpson/permute","owner":"gavinsimpson","description":"Restricted permutations","archived":false,"fork":false,"pushed_at":"2024-08-17T09:56:11.000Z","size":634,"stargazers_count":23,"open_issues_count":9,"forks_count":4,"subscribers_count":5,"default_branch":"main","last_synced_at":"2025-04-09T10:41:40.871Z","etag":null,"topics":["permutation","r","r-packages","restricted-permutations"],"latest_commit_sha":null,"homepage":"https://gavinsimpson.github.io/permute/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/gavinsimpson.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2014-09-13T16:14:33.000Z","updated_at":"2024-08-12T10:21:31.000Z","dependencies_parsed_at":"2024-06-19T22:48:57.186Z","dependency_job_id":"78ec56b1-e8cf-4d30-9ed5-fb7025bf9636","html_url":"https://github.com/gavinsimpson/permute","commit_stats":{"total_commits":451,"total_committers":2,"mean_commits":225.5,"dds":0.04212860310421285,"last_synced_commit":"b0717cd4ca6b686dc84129e7ec3c907fac51f8c2"},"previous_names":[],"tags_count":8,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gavinsimpson%2Fpermute","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gavinsimpson%2Fpermute/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gavinsimpson%2Fpermute/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/gavinsimpson%2Fpermute/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/gavinsimpson","download_url":"https://codeload.github.com/gavinsimpson/permute/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248441962,"owners_count":21104111,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["permutation","r","r-packages","restricted-permutations"],"created_at":"2024-10-14T18:06:22.432Z","updated_at":"2025-04-11T16:40:08.378Z","avatar_url":"https://github.com/gavinsimpson.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"## Restricted permutations with R\n\n[![CRAN version](https://www.r-pkg.org/badges/version/permute)](https://cran.r-project.org/package=permute)\n[![](https://cranlogs.r-pkg.org/badges/grand-total/permute)](https://cran.r-project.org/package=permute)\n[![R-CMD-check](https://github.com/gavinsimpson/permute/workflows/R-CMD-check/badge.svg)](https://github.com/gavinsimpson/cocorresp/actions)\n[![codecov.io](https://codecov.io/github/gavinsimpson/permute/coverage.svg?branch=master)](https://codecov.io/github/gavinsimpson/permute?branch=master)\n\n## What is permute?\n\n**permute** generates permutations from a range of restricted \npermutation designs.\n\nPermute provides an R implementation of the permutation schemes \ndeveloped by Cajo ter Braak and made available in the Canoco software, \nversion 3.1 (ter Braak, 1990). These permutation schemes draw upon \nideas from an earlier paper by Besag \u0026 Clifford (1989).\n\nSeveral types of permutation are available in **permute**:\n\n * Free permutation of objects\n * Time series or line transect designs, where the temporal or spatial ordering is preserved.\n * Spatial grid designs, where the spatial ordering is preserved in both coordinate directions\n * Permutation of plots or groups of samples.\n * Blocking factors which restrict permutations to within blocks. The preceding designs can be nested within blocks, allowing analysis of hierachical designs (e.g. split plot designs)\n\n### References\n\nBesag, J. and Clifford, P. (1989) Generalized Monte Carlo significance tests. *Biometrika* **76**; 633\u0026ndash;642.\n\nter Braak, C. J. F. (1990). *Update notes: CANOCO version 3.1*. Wageningen: Agricultural Mathematics Group. (UR).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgavinsimpson%2Fpermute","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fgavinsimpson%2Fpermute","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgavinsimpson%2Fpermute/lists"}