{"id":15013445,"url":"https://github.com/genenotebook/genenotebook","last_synced_at":"2025-04-12T04:44:12.951Z","repository":{"id":12212497,"uuid":"50998363","full_name":"genenotebook/genenotebook","owner":"genenotebook","description":"A collaborative notebook for genes and genomes","archived":false,"fork":false,"pushed_at":"2025-03-24T11:30:50.000Z","size":188654,"stargazers_count":11,"open_issues_count":28,"forks_count":11,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-03-24T12:36:38.362Z","etag":null,"topics":["d3js","data-warehouse","expression-browser","genome-analysis","genome-annotation","genome-browser","meteorjs","mongodb","nodejs","reactjs"],"latest_commit_sha":null,"homepage":"http://genenotebook.github.io/","language":"JavaScript","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"agpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/genenotebook.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-02-03T12:32:49.000Z","updated_at":"2023-03-15T09:36:27.000Z","dependencies_parsed_at":"2024-01-06T11:36:39.701Z","dependency_job_id":"b3b7dacc-2a59-4149-a983-3ae8ff17cd64","html_url":"https://github.com/genenotebook/genenotebook","commit_stats":{"total_commits":839,"total_committers":8,"mean_commits":104.875,"dds":0.2383790226460072,"last_synced_commit":"acbd02b0a08caf01517a765898f43116ab0d12c0"},"previous_names":[],"tags_count":23,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/genenotebook%2Fgenenotebook","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/genenotebook%2Fgenenotebook/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/genenotebook%2Fgenenotebook/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/genenotebook%2Fgenenotebook/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/genenotebook","download_url":"https://codeload.github.com/genenotebook/genenotebook/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248519468,"owners_count":21117757,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["d3js","data-warehouse","expression-browser","genome-analysis","genome-annotation","genome-browser","meteorjs","mongodb","nodejs","reactjs"],"created_at":"2024-09-24T19:44:17.563Z","updated_at":"2025-04-12T04:44:12.931Z","avatar_url":"https://github.com/genenotebook.png","language":"JavaScript","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![Anaconda-Server Badge](https://anaconda.org/bioconda/genenotebook/badges/version.svg)](https://anaconda.org/bioconda/genenotebook)[![Anaconda-Server Badge](https://anaconda.org/bioconda/genenotebook/badges/latest_release_date.svg)](https://anaconda.org/bioconda/genenotebook)[![Anaconda-Server Badge](https://anaconda.org/bioconda/genenotebook/badges/platforms.svg)](https://anaconda.org/bioconda/genenotebook)\n\n![Automated](https://img.shields.io/docker/cloud/automated/genenotebook/genenotebook.svg?style=flat-square\u0026logo=docker)![Build status](https://img.shields.io/docker/cloud/build/genenotebook/genenotebook.svg?style=flat-square\u0026logo=docker)\n\n![CircleCI](https://img.shields.io/circleci/build/github/genenotebook/genenotebook/master?label=Circle%20CI\u0026logo=circleci\u0026style=flat-square)\n\n# GeneNoteBook\n\n### A collaborative notebook for comparative genomics\n\n\u003e Full documentation is at http://genenotebook.github.io/\n\n### Install using Conda\n\n```\nconda install -c bioconda genenotebook\n```\n\n### Start GeneNoteBook\n\n```\ngenenotebook run\n```\n\nNavigate to http://localhost:3000\n\n\u003e :warning: The default admin account is `username: admin` `password: admin`, please change this immediately! :warning:\n\nAdd data (for example from testdata.tgz found in this repository)\n\n```\ngenenotebook add genome -u admin -p admin --port 3000 -n test testdata.fasta\ngenenotebook add annotation -u admin -p admin --port 3000 -n test testdata.gff3\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgenenotebook%2Fgenenotebook","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fgenenotebook%2Fgenenotebook","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgenenotebook%2Fgenenotebook/lists"}