{"id":22731094,"url":"https://github.com/genentech/spex_bundle","last_synced_at":"2025-08-04T15:33:35.514Z","repository":{"id":275877664,"uuid":"841753327","full_name":"Genentech/spex_bundle","owner":"Genentech","description":null,"archived":false,"fork":false,"pushed_at":"2024-10-27T17:04:10.000Z","size":1810,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-02-05T03:27:55.794Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Jupyter 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Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# omero server\nclone install if you not have omero https://github.com/ome/docker-example-omero\n\n# bundle\n\nThe production bundle of the application.\n\n## 1 Submodules\n\n### 1.1 Init all submodules\n```bash\ngit submodule update --init\ngit submodule foreach git checkout master\n```\n\n### 1.2 Update all submodules\n```bash\ngit pull\ngit submodule foreach \"git fetch \u0026\u0026 git reset --hard @{u}\"\n```\n\n## 2 Add .evn.local\n\n\n### 2.1 env.common\n\nGo to `microservices` folder, copy `.env.common` file and paste with name `.evn.common.local`.\nIn the file need to keep only the follow variables:\n```dotenv\nARANGODB_PASSWORD=\nREDIS_PASSWORD=\nOMERO_HOST=\nOMERO_WEB=\n```\nAnd set correct values for the variables.\nAlso, you can override any other variables from `.evn.common` file.\n\n### 2.2 env.local\n\nIn all `microservices/ms-*` folders need to create empty `.env.local` file.\nYou can override any other variables from `.evn` file if you know what you do.\n\n\n### 2.3 backend .env.local\n\nGo to folder `backend`, copy `.env` file and paste with name `.evn.local`.\nIn the file need to keep only the follow variables:\n```dotenv\nARANGODB_PASSWORD=\n\nJWT_SECRET_KEY=\n\n# env for docker\nARANGO_ROOT_PASSWORD=${ARANGODB_PASSWORD}\n```\nAnd set correct values for the variables.\nAlso, you can override any other variables from `.evn` file.\n## before run commands\n[I think you need to install docker on the server](https://www.docker.com/)\n\n[and have access to omero server or install it locally](https://github.com/ome/docker-example-omero)\n\n\n## 3 Commands of the application\n\nTo start the first time:\n```bash\n./app.sh build\n```\n\nTo stop:\n```bash\n./app.sh stop\n```\n\nTo start:\n```bash\n./app.sh start\n```\n\nto down (remove all docker containers of the application):\n```bash\n./app.sh down\n```\n\nto start after down:\n```bash\n./app.sh up\n```\n\nFor more information run:\n```bash\n./app.sh usage\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgenentech%2Fspex_bundle","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fgenentech%2Fspex_bundle","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgenentech%2Fspex_bundle/lists"}