{"id":18880174,"url":"https://github.com/genepattern/stream.preprocess","last_synced_at":"2026-02-20T12:30:16.718Z","repository":{"id":86542286,"uuid":"204981704","full_name":"genepattern/STREAM.Preprocess","owner":"genepattern","description":"Step one of the STREAM ssRNA-Seq Trajectory pipeline","archived":false,"fork":false,"pushed_at":"2020-02-04T17:51:13.000Z","size":31316,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":7,"default_branch":"develop","last_synced_at":"2024-12-31T03:13:35.199Z","etag":null,"topics":["genepattern-module","rna-seq","single-cell"],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/genepattern.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-08-28T16:59:06.000Z","updated_at":"2020-02-04T17:51:15.000Z","dependencies_parsed_at":null,"dependency_job_id":"4963bd1d-8a48-4def-935d-7e4c6288d276","html_url":"https://github.com/genepattern/STREAM.Preprocess","commit_stats":null,"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/genepattern%2FSTREAM.Preprocess","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/genepattern%2FSTREAM.Preprocess/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/genepattern%2FSTREAM.Preprocess/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/genepattern%2FSTREAM.Preprocess/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/genepattern","download_url":"https://codeload.github.com/genepattern/STREAM.Preprocess/tar.gz/refs/heads/develop","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":239846370,"owners_count":19706759,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["genepattern-module","rna-seq","single-cell"],"created_at":"2024-11-08T06:42:18.983Z","updated_at":"2026-02-20T12:30:16.645Z","avatar_url":"https://github.com/genepattern.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# STREAM.Preprocess\n\nPreprocess single cell RNA-seq data to prepare it for the STREAM trajectory analysis. This module will normalize, log transform, filter and remove mitochondiral genes.\n\n[Full Documentation](https://beta.genepattern.org/gp/getTaskDoc.jsp?name=urn:lsid:broad.mit.edu:cancer.software.genepattern.module.analysis:00395:0.2)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgenepattern%2Fstream.preprocess","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fgenepattern%2Fstream.preprocess","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgenepattern%2Fstream.preprocess/lists"}