{"id":27352067,"url":"https://github.com/genometric/gemse","last_synced_at":"2025-04-12T20:54:27.662Z","repository":{"id":87169337,"uuid":"92582703","full_name":"Genometric/GeMSE","owner":"Genometric","description":"GenoMetric Space Explorer","archived":false,"fork":false,"pushed_at":"2017-12-24T19:24:24.000Z","size":29525,"stargazers_count":2,"open_issues_count":0,"forks_count":2,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-04-12T20:54:07.080Z","etag":null,"topics":["clustering","genome-analysis","pattern-recognition","visualization"],"latest_commit_sha":null,"homepage":"http://www.bioinformatics.deib.polimi.it/genomic_computing/GeMSE/","language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Genometric.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2017-05-27T08:07:22.000Z","updated_at":"2019-05-02T02:51:19.000Z","dependencies_parsed_at":null,"dependency_job_id":"9e2db92d-e66a-4e16-a698-f1b2bf6e9056","html_url":"https://github.com/Genometric/GeMSE","commit_stats":null,"previous_names":[],"tags_count":6,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Genometric%2FGeMSE","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Genometric%2FGeMSE/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Genometric%2FGeMSE/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Genometric%2FGeMSE/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Genometric","download_url":"https://codeload.github.com/Genometric/GeMSE/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248631715,"owners_count":21136560,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["clustering","genome-analysis","pattern-recognition","visualization"],"created_at":"2025-04-12T20:54:26.441Z","updated_at":"2025-04-12T20:54:27.646Z","avatar_url":"https://github.com/Genometric.png","language":"Java","readme":"# GeMSE\n**Transparent, reproducible, and interactive exploratory data analysis tool for genomics interval-based data.**\n\n| [Introduction](https://youtu.be/75FCAoSmioA) | [Documentation](https://github.com/Genometric/GeMSE/wiki) | [Demos](https://youtu.be/B0hVsd9SE5Q?list=PLfWxoOMC6swJBgu4nIDgsoXO_sLuGnIqF) | [Download](https://github.com/Genometric/GeMSE/releases/) | [Homepage](http://www.bioinformatics.deib.polimi.it/GeMSE/) | [Publication](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1945-9)\n| -- |:--:| --:| --: | --: | --: |\n---\n\n### Publication\nJalili, V., Matteucci, M., Masseroli, M., \u0026 Ceri, S. (2017). \u003cbr/\u003e\n\u003cb\u003e[Explorative visual analytics on interval-based genomic data and their metadata.](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1945-9)\u003c/b\u003e\u003cbr/\u003e\nBMC bioinformatics, 18(1), 536.\n\n\n---\n\n\n### Tree-based tracking history of operations\n![alt text](https://github.com/Genometric/GeMSE/blob/master/TutorialData/history.gif \"Track analysis history\")\n\n### Interactive pattern analysis\n![alt text](https://github.com/Genometric/GeMSE/blob/master/TutorialData/patternAnalysis.gif \"Pattern analysis\")\n![alt text](https://github.com/Genometric/GeMSE/blob/master/TutorialData/patternDetails.gif \"Pattern in details\")\n\n### Responsive statistical inference\n![alt text](https://github.com/Genometric/GeMSE/blob/master/TutorialData/stateAnalysis.gif \"statistical inference\")\n![alt text](https://github.com/Genometric/GeMSE/blob/master/TutorialData/boxplot.gif \"Box plot\")\n\n### Graph view\n![alt text](https://github.com/Genometric/GeMSE/blob/master/TutorialData/directed.gif \"Force directed graph view\")\n![alt text](https://github.com/Genometric/GeMSE/blob/master/TutorialData/radial.gif \"Radial graph view\")\n![alt text](https://github.com/Genometric/GeMSE/blob/master/TutorialData/directedAgg.gif \"Directed aggregated graph view\")\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgenometric%2Fgemse","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fgenometric%2Fgemse","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgenometric%2Fgemse/lists"}