{"id":30799090,"url":"https://github.com/geo-omics/scripts","last_synced_at":"2025-10-26T10:42:50.573Z","repository":{"id":8252225,"uuid":"9699553","full_name":"Geo-omics/scripts","owner":"Geo-omics","description":"Metagenomic pipeline and other general scripts used in the lab.","archived":false,"fork":false,"pushed_at":"2025-01-24T19:22:10.000Z","size":11640,"stargazers_count":36,"open_issues_count":2,"forks_count":22,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-09-05T19:33:37.121Z","etag":null,"topics":["geomicrobiology","microbiology","ngs-analysis","perl","python","umich"],"latest_commit_sha":null,"homepage":"https://sites.lsa.umich.edu/geomicro/","language":"Perl","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":"nkallen/cache-money","license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Geo-omics.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"COPYING","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2013-04-26T16:27:16.000Z","updated_at":"2025-08-27T12:04:51.000Z","dependencies_parsed_at":"2022-09-19T22:06:40.120Z","dependency_job_id":"3f0caebc-1a08-43c5-9a3f-bb25cdb768e1","html_url":"https://github.com/Geo-omics/scripts","commit_stats":null,"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/Geo-omics/scripts","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Geo-omics%2Fscripts","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Geo-omics%2Fscripts/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Geo-omics%2Fscripts/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Geo-omics%2Fscripts/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Geo-omics","download_url":"https://codeload.github.com/Geo-omics/scripts/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Geo-omics%2Fscripts/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":281092779,"owners_count":26442440,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-26T02:00:06.575Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["geomicrobiology","microbiology","ngs-analysis","perl","python","umich"],"created_at":"2025-09-05T19:03:53.037Z","updated_at":"2025-10-26T10:42:50.568Z","avatar_url":"https://github.com/Geo-omics.png","language":"Perl","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Michigan Geomicrobiology Lab\n\nWelcome to the GitHub Repo for some general purpose NGS, Data analysis and\nmining scripts used in the lab. Some scripts implement our short-read QC,\nassembly, binning, etc. pipeline and depend on the presence of a number of\nthird-party software.  The rest are Bash scripts or in core\n[Perl](http://www.perl.org/ \"Perl Home\") or [Python](https://www.python.org/\n\"Python Home\"). This means, if you have Perl or Python 3 installed, you won't\nneed anything else to work with these scripts.\n\nSince these scripts are actively being used by the Lab, you can expect full\nsupport for any [issues](https://github.com/Geo-omics/scripts/issues \"Report an\nissue\"). Please do let us know if you find any bugs or easier/quicker/more\nelegant solutions.\n\n\n## Language and OS Dependencies\n\nThe scripts should work with variuos flavors of Linux and other unix-like\nenvironments.  Here is a list of easy to install languages that you'll need:\n\n* Perl version 5.10 +\n* Python version 3.5 +\n* R version 3 +\n\n## Contact\n\nPlease send questions or comments to \u003cgeo-omics-scripts@umich.edu\u003e.\n\n## Principal Investigator\n\n[Gregory J. Dick](https://sites.lsa.umich.edu/geomicro/ \"Geomicrobiology Lab Homepage\"), gdick [AT] umich [DOT] edu\n\n\n## License\n\nGeo-omics-scripts is free software: you can redistribute it and/or modify it\nunder the terms of the GNU General Public License as published by the Free\nSoftware Foundation, either version 3 of the License, or (at your option) any\nlater version.\n\n\n## Disclaimer\n\n**Geo-omics scripts are distributed in the hope that they will be useful, but\nWITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or\nFITNESS FOR A PARTICULAR PURPOSE.**\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgeo-omics%2Fscripts","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fgeo-omics%2Fscripts","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgeo-omics%2Fscripts/lists"}