{"id":26472676,"url":"https://github.com/getwilds/ww-vc-trio","last_synced_at":"2026-02-23T07:03:50.731Z","repository":{"id":233057049,"uuid":"783947050","full_name":"getwilds/ww-vc-trio","owner":"getwilds","description":"Variant calling WDL workflow using a trio of variant callers and analyzing consensus among them","archived":false,"fork":false,"pushed_at":"2024-07-08T05:18:43.000Z","size":27,"stargazers_count":0,"open_issues_count":0,"forks_count":2,"subscribers_count":0,"default_branch":"main","last_synced_at":"2025-10-25T22:11:11.178Z","etag":null,"topics":["wdl-workflow","wilds-wdl"],"latest_commit_sha":null,"homepage":"","language":"WDL","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/getwilds.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":".github/CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-04-08T22:19:39.000Z","updated_at":"2025-02-24T22:16:02.000Z","dependencies_parsed_at":null,"dependency_job_id":"611a3a5d-52a5-4658-8c04-ca222384de24","html_url":"https://github.com/getwilds/ww-vc-trio","commit_stats":null,"previous_names":["getwilds/ww-vc-trio"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/getwilds/ww-vc-trio","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/getwilds%2Fww-vc-trio","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/getwilds%2Fww-vc-trio/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/getwilds%2Fww-vc-trio/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/getwilds%2Fww-vc-trio/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/getwilds","download_url":"https://codeload.github.com/getwilds/ww-vc-trio/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/getwilds%2Fww-vc-trio/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29739024,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-23T04:51:08.365Z","status":"ssl_error","status_checked_at":"2026-02-23T04:49:15.865Z","response_time":90,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["wdl-workflow","wilds-wdl"],"created_at":"2025-03-19T21:44:16.018Z","updated_at":"2026-02-23T07:03:50.726Z","avatar_url":"https://github.com/getwilds.png","language":"WDL","funding_links":[],"categories":[],"sub_categories":[],"readme":"\u003e [!WARNING]\n\u003e **This repository has been archived as of 2026-01-12.** The functionality has been migrated and expanded upon in the [WILDS WDL Library](https://github.com/getwilds/wilds-wdl-library) as the [`ww-leukemia` pipeline](https://github.com/getwilds/wilds-wdl-library/tree/main/pipelines/ww-leukemia). Please refer to that instance for the latest versions, documentation, and updates.\n\n# ww-vc-trio\n[![Project Status: Experimental – Useable, some support, not open to feedback, unstable API.](https://getwilds.org/badges/badges/experimental.svg)](https://getwilds.org/badges/#experimental)\n\nThis WILDS WDL workflow takes samples through a standard alignment protocol and identifies variants using a trio of well-established variant callers. Finally, the workflow narrows it down to variants of confidence by analyzing consensus amongst the three variant callers.\n\n## Usage\n\nFor Fred Hutch users that are new to WDL, we recommend using [PROOF](https://sciwiki.fredhutch.org/dasldemos/proof-how-to/) to submit this workflow directly to the on-premise HPC cluster, as it simplifies interaction with Cromwell and provides a user-friendly front-end for job submission and tracking. 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See `LICENSE` for details.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgetwilds%2Fww-vc-trio","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fgetwilds%2Fww-vc-trio","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgetwilds%2Fww-vc-trio/lists"}