{"id":19244427,"url":"https://github.com/ghazaleze/biology-meets-programming","last_synced_at":"2025-04-21T09:33:44.151Z","repository":{"id":50939871,"uuid":"248801408","full_name":"GhazaleZe/Biology-Meets-Programming","owner":"GhazaleZe","description":"some codes of the \"Biology Meets Programming\" course from Coursera","archived":false,"fork":false,"pushed_at":"2021-04-26T11:00:37.000Z","size":54,"stargazers_count":8,"open_issues_count":0,"forks_count":1,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-04-01T12:49:15.797Z","etag":null,"topics":["bioinformatics","coursera"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/GhazaleZe.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2020-03-20T16:23:57.000Z","updated_at":"2025-02-23T11:40:34.000Z","dependencies_parsed_at":"2022-08-25T14:00:10.362Z","dependency_job_id":null,"html_url":"https://github.com/GhazaleZe/Biology-Meets-Programming","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GhazaleZe%2FBiology-Meets-Programming","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GhazaleZe%2FBiology-Meets-Programming/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GhazaleZe%2FBiology-Meets-Programming/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GhazaleZe%2FBiology-Meets-Programming/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/GhazaleZe","download_url":"https://codeload.github.com/GhazaleZe/Biology-Meets-Programming/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":250032507,"owners_count":21363850,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","coursera"],"created_at":"2024-11-09T17:23:32.303Z","updated_at":"2025-04-21T09:33:39.137Z","avatar_url":"https://github.com/GhazaleZe.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Biology Meets Programming \n\nMy codes of the Coursera's course named \"Biology Meets Programming: Bioinformatics for Beginners\"  are in this repository. \n\nThese files are for the first week :blush: :\n\n- hidden_messages_dictionary.py\n- ReverseComplement.py \n- PatternMatching.py\n- PatternInRegion.py\n\nThese files are for the second week :smile: :\n\n- SymbolArray.py\n- SkewArray.py\n- HammingDistance.py\n- ApproximatePatternMatching.py\n\nThese files are for the third week :grimacing: :\n\n- Motifs.py  \n- Consensus.py     \n- Score.py      \n- probability.py    \n- ProfileMostProbablePattern.py    \n- GreedyMotifSearch.py\n\n\u003cimg width=\"848\" alt=\"image_2020-03-26_02-09-28\" src=\"https://user-images.githubusercontent.com/41547574/77675701-e2e4f280-6faa-11ea-8df1-e2f43e6afb22.png\"\u003e\n\nThese files are for the fourth week :heart_eyes: :\n\n- RandomizedMotifSearch.py\n- Motif_Week4.py\n- Normalize.py\n- RandomizedMotifSearch.py\n- ProfileGeneratedString.py\n- RandomMotifs.py\n- GibbsSampler.py\n\n### Some additional notes:\n\n**Laplace’s Rule of Succession** is used for  **CountWithPseudocounts** function.   \n**RandomizedMotifSearch** has the advantage of being able to find **longer motifs**.\n\n\u003e Just don't forget to be happy :wink:\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fghazaleze%2Fbiology-meets-programming","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fghazaleze%2Fbiology-meets-programming","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fghazaleze%2Fbiology-meets-programming/lists"}