{"id":18440166,"url":"https://github.com/giannisdoukas/cwljnikernel","last_synced_at":"2025-04-07T21:33:01.953Z","repository":{"id":47571936,"uuid":"241447098","full_name":"giannisdoukas/CWLJNIKernel","owner":"giannisdoukas","description":"Jupyter Notebook Kernel for Common Workflow Language","archived":false,"fork":false,"pushed_at":"2021-08-23T19:49:39.000Z","size":1751,"stargazers_count":4,"open_issues_count":2,"forks_count":4,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-03-16T18:34:42.723Z","etag":null,"topics":["common-workflow-language","cwl","jupyter-notebook","workflows"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/giannisdoukas.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2020-02-18T19:20:15.000Z","updated_at":"2022-10-11T03:42:59.000Z","dependencies_parsed_at":"2022-09-06T15:50:38.541Z","dependency_job_id":null,"html_url":"https://github.com/giannisdoukas/CWLJNIKernel","commit_stats":null,"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/giannisdoukas%2FCWLJNIKernel","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/giannisdoukas%2FCWLJNIKernel/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/giannisdoukas%2FCWLJNIKernel/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/giannisdoukas%2FCWLJNIKernel/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/giannisdoukas","download_url":"https://codeload.github.com/giannisdoukas/CWLJNIKernel/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":247732781,"owners_count":20986920,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["common-workflow-language","cwl","jupyter-notebook","workflows"],"created_at":"2024-11-06T06:28:36.271Z","updated_at":"2025-04-07T21:32:56.935Z","avatar_url":"https://github.com/giannisdoukas.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# Jupyter Notebook Kernel for Common Workflow Language \n\n[![Build Status](https://travis-ci.com/giannisdoukas/CWLJNIKernel.svg)](https://travis-ci.com/giannisdoukas/CWLJNIKernel)\n[![Coverage Status](https://coveralls.io/repos/github/giannisdoukas/CWLJNIKernel/badge.svg?t=AHSikx)](https://coveralls.io/github/giannisdoukas/CWLJNIKernel)\n[![Gitter chat](https://badges.gitter.im/CWLJNIKernel/gitter.png)](https://gitter.im/CWLJNIKernel/community)\n[![Documentation Status](https://readthedocs.org/projects/cwljnikernel/badge/?version=latest)](https://cwljnikernel.readthedocs.io/en/latest/?badge=latest)\n[![Codacy Badge](https://api.codacy.com/project/badge/Grade/6c7585bdf708450d92d97c9e1add4633)](https://www.codacy.com/manual/giannisdoukas/CWLJNIKernel?utm_source=github.com\u0026amp;utm_medium=referral\u0026amp;utm_content=giannisdoukas/CWLJNIKernel\u0026amp;utm_campaign=Badge_Grade)\n\nThis is a jupyter notebook kernel which enables running Common Workflow Language. It uses \n[cwltool](https://github.com/common-workflow-language/cwltool) as the execution engine. The goal of the kernel is to \nimprove the human-in-the-loop interaction. The goal of the kernel is to improve human-in-the-loop by improving the \nfollowing:\n* Documenting the workflow\n* Enable the developer to execute a workflow with multiple steps splited in multiple JN cells\n* Enable the user to execute multiple workflows stitched together\n* Ensembl workflows\n    * Run the same workflow many times over different datasets or with different settings over the same data sets\n    * Run different workflows over the same datasets\n\n`Currently windows are not supported`\n\n## Examples\nIn examples directory there are many examples which illustrate how to use the kernel. \n![example](examples/example.png)\n\n## How to contribute\nIf you are a CWL developer and you would like to contribute feel free to open an issue and ask for new features you \nwould like to see. \n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgiannisdoukas%2Fcwljnikernel","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fgiannisdoukas%2Fcwljnikernel","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgiannisdoukas%2Fcwljnikernel/lists"}