{"id":21140883,"url":"https://github.com/glotzerlab/hoomd-examples","last_synced_at":"2025-06-10T15:31:57.385Z","repository":{"id":39745165,"uuid":"170398442","full_name":"glotzerlab/hoomd-examples","owner":"glotzerlab","description":"HOOMD-blue example scripts.","archived":false,"fork":false,"pushed_at":"2025-06-02T12:15:38.000Z","size":66787,"stargazers_count":34,"open_issues_count":6,"forks_count":14,"subscribers_count":10,"default_branch":"trunk-minor","last_synced_at":"2025-06-03T01:20:28.207Z","etag":null,"topics":["hard-particle","hoomd-blue","jupyter","molecular-dynamics","monte-carlo-simulation","particle-system","python","simulation","tutorial"],"latest_commit_sha":null,"homepage":null,"language":"Jupyter 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Notebook","readme":"# HOOMD-blue tutorials\n\nThese [jupyter] notebooks provide a tutorial for the [HOOMD-blue] simulation software and are\nincluded in HOOMD-blue's [documentation].\n\n[jupyter]: https://jupyter.org\n[HOOMD-blue]: https://glotzerlab.engin.umich.edu/hoomd-blue\n[documentation]: http://hoomd-blue.readthedocs.io\n\n## Outline\n\n* [Introducing HOOMD-blue](00-Introducing-HOOMD-blue/00-index.ipynb)\n* [Introducing Molecular Dynamics](01-Introducing-Molecular-Dynamics/00-index.ipynb)\n* [Logging](02-Logging/00-index.ipynb)\n* [Parallel Simulations With MPI](03-Parallel-Simulations-With-MPI/00-index.ipynb)\n* [Custom Actions In Python](04-Custom-Actions-In-Python/00-index.ipynb)\n* [Organizing and Executing Simulations](05-Organizing-and-Executing-Simulations/00-index.ipynb)\n* [Modelling Rigid Bodies](06-Modelling-Rigid-Bodies/00-index.ipynb)\n* [Modelling Patchy Particles](07-Modelling-Patchy-Particles/00-index.ipynb)\n* [Placing Barriers in the Simulation Box](08-Placing-Barriers-in-the-Simulation-Box/00-index.ipynb)\n* [Multiparticle Collision Dynamics](09-Multiparticle-Collision-Dynamics/00-index.ipynb)\n* [Modelling Flexible Active Interfaces](10-Modelling-Flexible-Active-Interfaces/00-index.ipynb)\n\n## Executing the tutorials\n\nYou can [install HOOMD-blue] and run these examples interactively.\n\n[install HOOMD-blue]: http://hoomd-blue.readthedocs.io\n\nClone the **hoomd-examples** repository and open the notebooks with the tool you\nprefer.\n\n## Prerequisites\n\nThese examples use the following python packages:\n\n* [fresnel](https://github.com/glotzerlab/fresnel)\n* [freud](http://glotzerlab.engin.umich.edu/freud/)\n* [GSD](https://github.com/glotzerlab/gsd)\n* [HOOMD-blue](http://glotzerlab.engin.umich.edu/hoomd-blue/)\n* [matplotlib](http://matplotlib.org/)\n* [pillow](https://python-pillow.org/)\n* [row](https://row.readthedocs.io/)\n* [signac](https://signac.readthedocs.io/)\n\nYou can install these from [conda-forge](https://conda-forge.org/):\n\n```bash\nmicromamba install fresnel freud gsd hoomd matplotlib pillow row signac\n```\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fglotzerlab%2Fhoomd-examples","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fglotzerlab%2Fhoomd-examples","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fglotzerlab%2Fhoomd-examples/lists"}