{"id":13639080,"url":"https://github.com/grailbio/bio","last_synced_at":"2025-04-19T21:35:35.169Z","repository":{"id":89119811,"uuid":"126875697","full_name":"grailbio/bio","owner":"grailbio","description":"Bioinformatic infrastructure libraries","archived":false,"fork":false,"pushed_at":"2020-08-18T18:34:59.000Z","size":1240,"stargazers_count":73,"open_issues_count":2,"forks_count":16,"subscribers_count":18,"default_branch":"master","last_synced_at":"2024-08-03T01:13:48.119Z","etag":null,"topics":["bioinformatics","data-science","golang"],"latest_commit_sha":null,"homepage":"","language":"Go","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/grailbio.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2018-03-26T18:55:40.000Z","updated_at":"2024-01-23T13:10:12.000Z","dependencies_parsed_at":null,"dependency_job_id":"722748cf-156d-490b-aa13-6132ede7ae79","html_url":"https://github.com/grailbio/bio","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/grailbio%2Fbio","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/grailbio%2Fbio/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/grailbio%2Fbio/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/grailbio%2Fbio/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/grailbio","download_url":"https://codeload.github.com/grailbio/bio/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":223810264,"owners_count":17206723,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","data-science","golang"],"created_at":"2024-08-02T01:00:57.426Z","updated_at":"2024-11-09T09:30:34.683Z","avatar_url":"https://github.com/grailbio.png","language":"Go","funding_links":[],"categories":["General Bioinformatics Libraries"],"sub_categories":[],"readme":"## Bioinformatics tools\n\n- [bio-fusion](https://github.com/grailbio/bio/tree/master/fusion): High-performance RNA/DNA fusion detector\n\n## Infrastructure libraries\n\n- [encoding/bamprovider](https://godoc.org/github.com/grailbio/bio/encoding/bamprovider): Parallel BAM/PAM reader and parallel paired reader.\n- [encoding/fasta](https://godoc.org/github.com/grailbio/bio/encoding/fasta): FASTA reader and writer.\n- [encoding/fastq](https://godoc.org/github.com/grailbio/bio/encoding/fastq): FASTQ reader\n- [encoding/pam](https://godoc.org/github.com/grailbio/bio/encoding/pam): A faster, smaller alternative to BAM files.\n- [encoding/bam](https://godoc.org/github.com/grailbio/bio/encoding/bam): Utilities for BAM files. Based on github.com/biogo/hts.\n- [encoding/converter](https://godoc.org/github.com/grailbio/bio/encoding/converter): Conversion between file formats\n- [cmd/bio-pamtool](https://github.com/grailbio/bio/tree/master/cmd/bio-pamtool): \"samtool\" like tool for PAM and BAM.\n- [cmd/bio-bam-sort](https://github.com/grailbio/bio/tree/master/cmd/bio-bam-sort): Tool for sorting and merging aligner outputs into PAM or BAM.\n- [cmd/bio-bam-gindex](https://github.com/grailbio/bio/tree/master/cmd/bio-bam-gindex): Alternate index for faster seeking into BAM files.\n- [cmd/bio-pileup](https://github.com/grailbio/bio/tree/master/cmd/bio-pileup): Tool to support variant calling on PAM or BAM.\n- [biosimd](https://godoc.org/github.com/grailbio/bio/biosimd): Fast reverse-complement, pack/unpack from BAM seq[] format, etc.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgrailbio%2Fbio","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fgrailbio%2Fbio","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgrailbio%2Fbio/lists"}