{"id":20074782,"url":"https://github.com/greenelab/bioconductor-scraper","last_synced_at":"2026-06-08T06:31:52.355Z","repository":{"id":79359097,"uuid":"92065203","full_name":"greenelab/bioconductor-scraper","owner":"greenelab","description":"A scraper which tries to generate conda recipes for bioconductor and other needed R packages.","archived":false,"fork":false,"pushed_at":"2017-06-05T17:50:39.000Z","size":24,"stargazers_count":1,"open_issues_count":0,"forks_count":1,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-05-23T00:26:44.435Z","etag":null,"topics":["bioconductor","scraper","script","tool"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/greenelab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2017-05-22T14:50:11.000Z","updated_at":"2020-09-29T19:51:16.000Z","dependencies_parsed_at":"2023-04-16T14:18:33.141Z","dependency_job_id":null,"html_url":"https://github.com/greenelab/bioconductor-scraper","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/greenelab/bioconductor-scraper","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/greenelab%2Fbioconductor-scraper","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/greenelab%2Fbioconductor-scraper/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/greenelab%2Fbioconductor-scraper/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/greenelab%2Fbioconductor-scraper/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/greenelab","download_url":"https://codeload.github.com/greenelab/bioconductor-scraper/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/greenelab%2Fbioconductor-scraper/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34051768,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-08T02:00:07.615Z","response_time":111,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioconductor","scraper","script","tool"],"created_at":"2024-11-13T14:54:26.770Z","updated_at":"2026-06-08T06:31:52.313Z","avatar_url":"https://github.com/greenelab.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# biconductor-scraper\nA scraper which tries to generate conda recipes for bioconductor and other needed R packages.\n\n## Getting Started\n\nYou should make sure you have MongoDB installed and running. You should also create\na virtual environment and run `pip install -r requirements.txt` within it.\n\nBefore anything else will work, running `python generate_annotation_recipes.py`\nis required. This will populate a mongo collection with metadata about packages.\nTracking all this metadata in a database allows `build_all_recipes.py` to be\nstopped and restarted without losing work. Once you've done that you can either run:\n\n```\npython build_all_recipes.py\n```\n\nto build all the packages on bioconductor.org, or\n\n```\npython create_recipe.py -n \u003cpackage-name\u003e\n```\n\nto just build one package by name.\n\nNote that this repo adheres to PEP8 standards with a 100 character line limit.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgreenelab%2Fbioconductor-scraper","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fgreenelab%2Fbioconductor-scraper","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fgreenelab%2Fbioconductor-scraper/lists"}