{"id":20594989,"url":"https://github.com/hackuarium/bioreactor-docker","last_synced_at":"2026-04-11T21:41:23.063Z","repository":{"id":84232714,"uuid":"272456554","full_name":"Hackuarium/bioreactor-docker","owner":"Hackuarium","description":"Dockerization of Hackuarium/nodered-bioreactor-gui","archived":false,"fork":false,"pushed_at":"2020-06-26T14:47:08.000Z","size":115,"stargazers_count":1,"open_issues_count":1,"forks_count":1,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-08-02T23:36:38.107Z","etag":null,"topics":["bioreactor","docker","gui"],"latest_commit_sha":null,"homepage":"https://github.com/Hackuarium/nodered-bioreactor-gui","language":"JavaScript","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Hackuarium.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-06-15T14:11:55.000Z","updated_at":"2024-07-23T14:54:30.000Z","dependencies_parsed_at":"2023-05-24T01:45:18.617Z","dependency_job_id":null,"html_url":"https://github.com/Hackuarium/bioreactor-docker","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/Hackuarium/bioreactor-docker","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Hackuarium%2Fbioreactor-docker","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Hackuarium%2Fbioreactor-docker/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Hackuarium%2Fbioreactor-docker/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Hackuarium%2Fbioreactor-docker/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Hackuarium","download_url":"https://codeload.github.com/Hackuarium/bioreactor-docker/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Hackuarium%2Fbioreactor-docker/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":31696743,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-04-11T21:17:31.016Z","status":"ssl_error","status_checked_at":"2026-04-11T21:17:24.556Z","response_time":54,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioreactor","docker","gui"],"created_at":"2024-11-16T08:11:12.422Z","updated_at":"2026-04-11T21:41:23.045Z","avatar_url":"https://github.com/Hackuarium.png","language":"JavaScript","funding_links":[],"categories":[],"sub_categories":[],"readme":"# bioreactor-docker\n\nThis project is the dockerization of [Hackuarium/nodered-bioreactor-gui](https://github.com/Hackuarium/nodered-bioreactor-gui).\n\n### Install docker\n\n```bash\ncurl -L https://github.com/docker/compose/releases/download/1.22.0/docker-compose-$(uname -s)-\\$(uname -m) -o /usr/local/bin/docker-compose\n```\n\n## Starting the project\n\nOnce you cloned the project, you can simply go to the folder and run:\n\n```bash\ndocker-compose up\n```\n\n## Stopping the project\n\nYou might want to do this if you pull some changes from the cloud, then start again.\n\n```bash\ndocker-compose down\n```\n\n## Docker images\n\nWe had to install three different docker images in the project:\n\n- Node-red\n- Mosquitto\n- InfluxDB\n\nThe images are installed (or built) thanks to the configuration in the `docker-compose.yml` file. The images were found on [Docker Hub](https://hub.docker.com/).\n\n### Node-Red\n\nSource image: `nodered/node-red`\n\nThe node-red image has to be built because we add some packages to it (all the dependencies of the `nodered-bioreactor-gui). All the packages are added in the file`node-red/Dockerfile`.\n\n### Mosquitto\n\nSource image: `eclipse-mosquitto`\n\n### InfluxDB\n\nSource image: `influxdb`\n\nThe node-red graphical interface of the bioreactor requires some influxDB databases to be already existing. We create these databases, as well as the continuous queries in the file `influxdb/init/startup.iql`.\n\nThe data of the database is in `influxdb/db/`.\n\nConnect to influxdb for debug:\n\n```bash\ndocker-compose exec influxdb bash\n```\n\n## Deployment machine\n\n## Docker folder\n\nDocker is in `/usr/local/docker`. This is where the project is cloned.\n\n## Proxy\n\n**Apache** was used.\n\nThere is only one port accessible from the internet: HTTPS - port 443. Many services, which work on various ports, run behind this one entry point. This is why you have to configure a proxy, which will redirect queries to the correct services. In our case, we want to redirect [https://bioreactor.hackuarium.org]() to [http://localhost:1880]().\n\nThe proxy config file is: `etc/httpd/conf.d`.\n\nThe code underneath is what should be used as the configuration of port 443:\n\n```\n\u003cVirtualHost *:443\u003e\n\tUse SSLConf bioreactor.hackuarium.org\n\n    ServerName bioreactor.hackuarium.org\n\n\tProxyRequests Off\n    ProxyPreserveHost On\n\n\tRewriteEngine On\n\tRewriteCond %{HTTP:Upgrade} websocket [NC]\n\tRewriteRule /(.*) ws://localhost:1880/$1 [P,L]\n\n    ProxyPass       \t/\thttp://localhost:1880/\n    ProxyPassReverse \t/ \thttp://localhost:1880/\n\u003c/VirtualHost\u003e\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhackuarium%2Fbioreactor-docker","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fhackuarium%2Fbioreactor-docker","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhackuarium%2Fbioreactor-docker/lists"}