{"id":13703863,"url":"https://github.com/hail-is/hail","last_synced_at":"2025-05-13T19:10:50.606Z","repository":{"id":37548116,"uuid":"45069467","full_name":"hail-is/hail","owner":"hail-is","description":"Cloud-native genomic dataframes and batch computing","archived":false,"fork":false,"pushed_at":"2025-05-07T14:42:48.000Z","size":131380,"stargazers_count":1001,"open_issues_count":266,"forks_count":250,"subscribers_count":52,"default_branch":"main","last_synced_at":"2025-05-07T15:47:38.685Z","etag":null,"topics":["bioinformatics","genetics","genomics","gwas","hail","python","software","vcf"],"latest_commit_sha":null,"homepage":"https://hail.is","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/hail-is.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":"AUTHORS","dei":null,"publiccode":null,"codemeta":null,"zenodo":".zenodo.json"}},"created_at":"2015-10-27T20:55:42.000Z","updated_at":"2025-05-07T14:42:52.000Z","dependencies_parsed_at":"2023-09-22T00:49:26.265Z","dependency_job_id":"6ea4e561-f491-4367-878a-aa47d1ef35c4","html_url":"https://github.com/hail-is/hail","commit_stats":{"total_commits":10842,"total_committers":110,"mean_commits":98.56363636363636,"dds":0.8159011252536432,"last_synced_commit":"42a072ec1aeb662a8dbc02d8c3b78301efa071a1"},"previous_names":[],"tags_count":135,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hail-is%2Fhail","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hail-is%2Fhail/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hail-is%2Fhail/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hail-is%2Fhail/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hail-is","download_url":"https://codeload.github.com/hail-is/hail/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":254010823,"owners_count":21998993,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","genetics","genomics","gwas","hail","python","software","vcf"],"created_at":"2024-08-02T21:01:00.923Z","updated_at":"2025-05-13T19:10:50.590Z","avatar_url":"https://github.com/hail-is.png","language":"Python","readme":"# Hail\n\n[![Zulip](https://img.shields.io/badge/zulip-join_chat-brightgreen.svg)](https://hail.zulipchat.com?utm_source=badge\u0026utm_medium=badge\u0026utm_campaign=pr-badge) [![DOI](https://zenodo.org/badge/45069467.svg)](https://zenodo.org/badge/latestdoi/45069467) [![PyPI version](https://badge.fury.io/py/hail.svg)](https://badge.fury.io/py/hail)\n\n[Hail](https://hail.is) is an open-source, general-purpose, Python-based data analysis tool with additional data types and methods for working with genomic data.\n\nHail is built to scale and has first-class support for multi-dimensional structured data, like the genomic data in a genome-wide association study (GWAS).\n\nHail is exposed as a Python library, using primitives for distributed queries and linear algebra implemented in Scala, [Spark](https://spark.apache.org/docs/latest/index.html), and increasingly C++.\n\nSee the [documentation](https://hail.is/docs/0.2/) for more info on using Hail.\n\n### Community\n\nHail has been widely adopted in academia and industry, including as the analysis platform for the [genome aggregation database](https://gnomad.broadinstitute.org) and [UK Biobank rapid GWAS](https://www.nealelab.is/uk-biobank). Learn more about [Hail-powered science](https://hail.is/references.html).\n\n### Contribute\n\nIf you'd like to discuss or contribute to the development of methods or infrastructure, please:\n\n- see the [For Software Developers](https://hail.is/docs/0.2/getting_started_developing.html) section of the installation guide for info on compiling Hail\n- chat with us about development in our [Zulip chatroom](https://hail.zulipchat.com)\n- visit the [Development Forum](https://dev.hail.is) for longer-form discussions\n\u003c!--- - read [this post]() (coming soon!) for tips on submitting a successful Pull Request to our repository ---\u003e\n\nHail uses a continuous deployment approach to software development, which means we frequently add new features. We update users about changes to Hail via the [Discussion Forum](https://discuss.hail.is). We recommend creating an account on the Discussion Forum so that you can subscribe to these updates as well.\n\n### Maintainer\n\nHail is maintained by a team in the [Neale lab](https://nealelab.is/) at the [Stanley Center for Psychiatric Research](https://www.broadinstitute.org/stanley) of the [Broad Institute of MIT and Harvard](https://www.broadinstitute.org) and the [Analytic and Translational Genetics Unit](https://www.atgu.mgh.harvard.edu/) of [Massachusetts General Hospital](https://www.massgeneral.org/).\n\nContact the Hail team at \u003ccode\u003e\u003ca href=\"mailto:hail@broadinstitute.org\"\u003ehail@broadinstitute.org\u003c/a\u003e\u003c/code\u003e.\n\n### Citing Hail\n\nIf you use Hail for published work, please cite the software. You can get a\ncitation for the version of Hail you installed by executing:\n\n```python\nimport hail as hl\nprint(hl.citation())\n```\n\nWhich will look like:\n\n```\nHail Team. Hail 0.2.13-81ab564db2b4. https://github.com/hail-is/hail/releases/tag/0.2.13.\n```\n\n##### Acknowledgements\n\nThe Hail team has several sources of funding at the Broad Institute:\n- The Stanley Center for Psychiatric Research, which together with Neale Lab has provided an incredibly supportive and stimulating home.\n- Principal Investigators Benjamin Neale and Daniel MacArthur, whose scientific leadership has been essential for solving the right problems.\n- Jeremy Wertheimer, whose strategic advice and generous philanthropy have been essential for growing the impact of Hail.\n\nWe are grateful for generous support from:\n- The National Institute of Diabetes and Digestive and Kidney Diseases\n- The National Institute of Mental Health\n- The National Human Genome Research Institute\n- The Chan Zuckerberg Initiative\n\nWe would like to thank \u003ca href=\"https://zulipchat.com/\"\u003eZulip\u003c/a\u003e for supporting\nopen-source by providing free hosting, and YourKit, LLC for generously providing\nfree licenses for \u003ca href=\"https://www.yourkit.com/java/profiler/\"\u003eYourKit Java\nProfiler\u003c/a\u003e for open-source development.\n\n\u003cimg src=\"https://www.yourkit.com/images/yklogo.png\" align=\"right\" /\u003e\n","funding_links":[],"categories":["Ranked by starred repositories","Next Generation Sequencing","Genomic data wrangling","医疗领域","Python","Packages"],"sub_categories":["Data Analysis","Mendelian randomization in _cis_","Bioinformatics"],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhail-is%2Fhail","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fhail-is%2Fhail","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhail-is%2Fhail/lists"}