{"id":19519546,"url":"https://github.com/hammerlab/bdgenomics-notebook","last_synced_at":"2026-03-04T10:02:54.071Z","repository":{"id":15973828,"uuid":"18716686","full_name":"hammerlab/bdgenomics-notebook","owner":"hammerlab","description":null,"archived":false,"fork":false,"pushed_at":"2014-05-06T07:35:26.000Z","size":256,"stargazers_count":2,"open_issues_count":0,"forks_count":0,"subscribers_count":11,"default_branch":"master","last_synced_at":"2025-11-20T10:06:29.484Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/hammerlab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2014-04-12T22:58:04.000Z","updated_at":"2017-10-15T23:04:50.000Z","dependencies_parsed_at":"2022-09-10T14:11:49.654Z","dependency_job_id":null,"html_url":"https://github.com/hammerlab/bdgenomics-notebook","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/hammerlab/bdgenomics-notebook","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hammerlab%2Fbdgenomics-notebook","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hammerlab%2Fbdgenomics-notebook/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hammerlab%2Fbdgenomics-notebook/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hammerlab%2Fbdgenomics-notebook/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hammerlab","download_url":"https://codeload.github.com/hammerlab/bdgenomics-notebook/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hammerlab%2Fbdgenomics-notebook/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":30078307,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-03-04T08:01:56.766Z","status":"ssl_error","status_checked_at":"2026-03-04T08:00:42.919Z","response_time":59,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-11T00:18:58.824Z","updated_at":"2026-03-04T10:02:49.055Z","avatar_url":"https://github.com/hammerlab.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"# A Walk Through Big Data Genomics Data Types\n\nYou can view this notebook online via iPython's nbviewer [here](http://nbviewer.ipython.org/github/hammerlab/bdgenomics-notebook/blob/master/Big-Data-Genomics-Tutorial.ipynb). (Note, for some reason raw text fields lose formatting when viewed this way: downloading and locally running this notebook makes viewing those fields easier.)\n\nThis [iPython notebook](http://ipython.org/) is meant to introduce you to the various datatypes used with the ADAM stack to process next-generation sequencing (NGS) data.\n\nTo get up and running, simply start the iPython notebook in this directory with `ipython notebook` and open the notebook.\n\nADAM uses [Avro](http://avro.apache.org/) to specify its datatypes, and thus you must have the `avro` Python package installed in order to run this tutorial. The easiest way to do this is with `pip install avro`.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhammerlab%2Fbdgenomics-notebook","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fhammerlab%2Fbdgenomics-notebook","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhammerlab%2Fbdgenomics-notebook/lists"}