{"id":24852194,"url":"https://github.com/hdmf-dev/hdmf-zarr","last_synced_at":"2025-10-14T23:31:02.361Z","repository":{"id":42010790,"uuid":"480721635","full_name":"hdmf-dev/hdmf-zarr","owner":"hdmf-dev","description":"Zarr I/O backend for HDMF","archived":false,"fork":false,"pushed_at":"2025-10-07T20:29:30.000Z","size":3874,"stargazers_count":9,"open_issues_count":40,"forks_count":7,"subscribers_count":7,"default_branch":"dev","last_synced_at":"2025-10-07T20:36:29.890Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://hdmf-zarr.readthedocs.io/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/hdmf-dev.png","metadata":{"files":{"readme":"README.rst","changelog":"CHANGELOG.md","contributing":"docs/CONTRIBUTING.rst","funding":null,"license":"LICENSE.txt","code_of_conduct":".github/CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2022-04-12T08:35:18.000Z","updated_at":"2025-10-07T20:29:33.000Z","dependencies_parsed_at":"2023-02-10T14:46:37.629Z","dependency_job_id":"aea52664-b1e7-4dca-b853-3623b16e69ca","html_url":"https://github.com/hdmf-dev/hdmf-zarr","commit_stats":{"total_commits":108,"total_committers":7,"mean_commits":"15.428571428571429","dds":0.6574074074074074,"last_synced_commit":"f5f09c8fe0f210c88bed8bfc9501aadc17ed076c"},"previous_names":[],"tags_count":21,"template":false,"template_full_name":null,"purl":"pkg:github/hdmf-dev/hdmf-zarr","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hdmf-dev%2Fhdmf-zarr","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hdmf-dev%2Fhdmf-zarr/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hdmf-dev%2Fhdmf-zarr/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hdmf-dev%2Fhdmf-zarr/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hdmf-dev","download_url":"https://codeload.github.com/hdmf-dev/hdmf-zarr/tar.gz/refs/heads/dev","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hdmf-dev%2Fhdmf-zarr/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":279019161,"owners_count":26086685,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-14T02:00:06.444Z","response_time":60,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-01-31T14:48:30.327Z","updated_at":"2025-10-14T23:31:02.356Z","avatar_url":"https://github.com/hdmf-dev.png","language":"Python","funding_links":[],"categories":["Life sciences"],"sub_categories":["Kerchunk"],"readme":".. image:: docs/source/figures/logo_hdmf_zarr.png\n     :width: 400\n\nhdmf-zarr\n=========\n\nThe ``hdmf-zarr`` library implements a Zarr v2 backend for HDMF as well as convenience classes for integration of Zarr with PyNWB to support writing of NWB files to Zarr.\n\n**Status:** The Zarr backend is **under development** and may still change. See the `overiew page \u003chttps://hdmf-zarr.readthedocs.io/en/stable/overview.html\u003e`_ for an overview of the available features and known limitations of hdmf-zarr.\n\nSupport for Zarr v3 is planned. You can track progress of the support in https://github.com/hdmf-dev/hdmf-zarr/issues/202.\n\n\nDocumentation Status\n--------------------\n\nLatest release: \n\n.. image:: https://readthedocs.org/projects/hdmf-zarr/badge/?version=stable\n     :target: https://hdmf-zarr.readthedocs.io/en/stable/?badge=stable\n     :alt: Documentation status for latest release\n\nDev branch: \n\n.. image:: https://readthedocs.org/projects/hdmf-zarr/badge/?version=dev\n     :target: https://hdmf-zarr.readthedocs.io/en/dev/?badge=dev\n     :alt: Documentation status for dev branch\n\nCI / Health Status\n------------------\n\n.. image:: https://codecov.io/gh/hdmf-dev/hdmf-zarr/branch/dev/graph/badge.svg\n    :target: https://codecov.io/gh/hdmf-dev/hdmf-zarr\n\n.. image:: https://github.com/hdmf-dev/hdmf-zarr/actions/workflows/run_coverage.yml/badge.svg\n    :target: https://github.com/hdmf-dev/hdmf-zarr/actions/workflows/run_coverage.yml\n\n.. image:: https://github.com/hdmf-dev/hdmf-zarr/actions/workflows/run_tests.yml/badge.svg\n    :target: https://github.com/hdmf-dev/hdmf-zarr/actions/workflows/run_tests.yml\n\n.. image:: https://github.com/hdmf-dev/hdmf-zarr/actions/workflows/run_all_tests.yml/badge.svg\n    :target: https://github.com/hdmf-dev/hdmf-zarr/actions/workflows/run_all_tests.yml\n\n.. image:: https://github.com/hdmf-dev/hdmf-zarr/actions/workflows/check_external_links.yml/badge.svg\n    :target: https://github.com/hdmf-dev/hdmf-zarr/actions/workflows/check_external_links.yml\n\n.. image:: https://github.com/hdmf-dev/hdmf-zarr/actions/workflows/deploy_release.yml/badge.svg\n    :target: https://github.com/hdmf-dev/hdmf-zarr/actions/workflows/deploy_release.yml\n\n.. image:: https://github.com/hdmf-dev/hdmf-zarr/actions/workflows/ruff.yml/badge.svg\n    :target: https://github.com/hdmf-dev/hdmf-zarr/actions/workflows/ruff.yml\n\n.. image:: https://github.com/hdmf-dev/hdmf-zarr/actions/workflows/codespell.yml/badge.svg\n    :target: https://github.com/hdmf-dev/hdmf-zarr/actions/workflows/codespell.yml\n\n.. image:: https://github.com/hdmf-dev/hdmf-zarr/actions/workflows/HDMF_dev.yaml/badge.svg\n    :target: https://github.com/hdmf-dev/hdmf-zarr/actions/workflows/HDMF_dev.yaml\n\n----------------\n\nIf you use HDMF or hdmf_zarr in your research, please use the following citation:\n\n* A. J. Tritt, O. Ruebel, B. Dichter, R. Ly, D. Kang, E. F. Chang, L. M. Frank, K. Bouchard,\n  *\"HDMF: Hierarchical Data Modeling Framework for Modern Science Data Standards,\"*\n  2019 IEEE International Conference on Big Data (Big Data),\n  Los Angeles, CA, USA, 2019, pp. 165-179, doi: 10.1109/BigData47090.2019.9005648.\n* HDMF-Zarr, RRID:SCR_022709\n\nDocumentation\n-------------\n\nSee the ``hdmf-zarr`` documentation for details: https://hdmf-zarr.readthedocs.io\n\nUsage\n-----\n\nThe library is intended to be used in conjunction with HDMF. ``hdmf-zarr`` mainly provides\nwith the ``ZarrIO`` class an alternative to the ``HDF5IO`` I/O backend that ships with HDMF.\nTo support customization of I/O settings, ``hdmf-zarr`` provides ``ZarrDataIO`` (similar to\n``H5DataIO`` in HDMF). Using ``ZarrIO`` and ``ZarrDataIO`` works much in the same way as ``HDF5IO``.\nTo ease integration with the NWB data standard and PyNWB, ``hdmf-zarr`` provides the ``NWBZarrIO``\nclass as alternative to ``pynwb.NWBHDF5IO``. See the tutorials included with the documentation for more details.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhdmf-dev%2Fhdmf-zarr","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fhdmf-dev%2Fhdmf-zarr","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhdmf-dev%2Fhdmf-zarr/lists"}