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tumopp\n\n[![Build status](https://github.com/heavywatal/tumopp/workflows/build/badge.svg)](https://github.com/heavywatal/tumopp/actions)\n\n*tumopp* is a fast and flexible tumor growth simulator.\nThe core library is written in C++.\nIt can be installed and run via [R package](https://github.com/heavywatal/rtumopp/).\n\n\n## Requirements\n\n- Unix-like environment (macOS, Linux, WSL, MinGW on MSYS2, etc.)\n- C++17 compiler (clang++ \u003e= Apple clang 11.0, g++ \u003e= 9.1)\n- [CMake](https://cmake.org/) (\u003e= 3.21.0)\n\nThe following libraries are optional or automatically installed:\n\n- [clippson](https://github.com/heavywatal/clippson)\n- [cxxwtl](https://github.com/heavywatal/cxxwtl)\n- [pcglite](https://github.com/heavywatal/pcglite)\n- [zlib](https://zlib.net)\n\n\n## Installation\n\nSee [tumopp R package](https://heavywatal.github.io/rtumopp/).\n\n\n## Alternative installation for command-line execution\n\nThe easiest way is to use [Homebrew](https://brew.sh/).\nThe following command installs tumopp with its dependencies:\n```sh\nbrew install heavywatal/tap/tumopp\n```\n\nYou can manually install the latest version from source code to an arbitrary `DESTINATION`:\n```sh\ngit clone https://github.com/heavywatal/tumopp.git\ncd tumopp/\nDESTINATION=${HOME}/local\ncmake -S . -B build -DCMAKE_INSTALL_PREFIX=$DESTINATION\ncmake --build build -j 2\ncmake --install build -j 2\nPATH=${DESTINATION}/bin:$PATH\n```\n\nExample:\n```sh\ntumopp -h\ntumopp -N20000 -D3 -Chex -k100 -d0.1 -m0.5 -o OUTPUT_DIR\n```\n\n\n## API Document\n\n- [Online documentation generated with doxygen](https://heavywatal.github.io/tumopp/)\n- @ref params\n\n\n## Reference\n\nWatal M. Iwasaki and Hideki Innan (2017)\n\"Simulation Framework for Generating Intratumor Heterogeneity Patterns in a Cancer Cell Population\"\n[*PLOS ONE* 12(9): e0184229](https://doi.org/10.1371/journal.pone.0184229)\n\n[Project page on GitHub](https://github.com/heavywatal/tumopp)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fheavywatal%2Ftumopp","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fheavywatal%2Ftumopp","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fheavywatal%2Ftumopp/lists"}