{"id":16320086,"url":"https://github.com/helenalc/biocspatialchallenges","last_synced_at":"2026-01-24T10:35:41.722Z","repository":{"id":55549179,"uuid":"320030692","full_name":"HelenaLC/BiocSpatialChallenges","owner":"HelenaLC","description":null,"archived":false,"fork":false,"pushed_at":"2020-12-22T15:11:13.000Z","size":211,"stargazers_count":1,"open_issues_count":2,"forks_count":1,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-05-14T07:16:30.576Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/HelenaLC.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2020-12-09T17:29:44.000Z","updated_at":"2020-12-15T17:04:03.000Z","dependencies_parsed_at":"2022-08-15T03:00:45.034Z","dependency_job_id":null,"html_url":"https://github.com/HelenaLC/BiocSpatialChallenges","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/HelenaLC/BiocSpatialChallenges","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/HelenaLC%2FBiocSpatialChallenges","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/HelenaLC%2FBiocSpatialChallenges/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/HelenaLC%2FBiocSpatialChallenges/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/HelenaLC%2FBiocSpatialChallenges/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/HelenaLC","download_url":"https://codeload.github.com/HelenaLC/BiocSpatialChallenges/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/HelenaLC%2FBiocSpatialChallenges/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28725374,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-24T10:24:43.181Z","status":"ssl_error","status_checked_at":"2026-01-24T10:24:36.112Z","response_time":89,"last_error":"SSL_read: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-10T22:29:03.651Z","updated_at":"2026-01-24T10:35:41.704Z","avatar_url":"https://github.com/HelenaLC.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"# Motivation\n\nThe goal of `BiocSpatialChallenges` is to host challenges contributed by and for the Bioconductor community in the context of spatially resolved transcriptomics data.\n\nWhile infrastructure and workflows for spatially resolved transcriptomics data analysis are already available elsewhere, we hope to develop tools that interact nicely with already existent Bioconductor infrastructure - as a community!\n\n# Structure\n\n- Each challenge is a stand-alone `.Rmd` file, located in the `vignettes/challenges` directory\n- Challenges are rated at one of three levels of difficulty: novice, intermediate, advanced\n- Ideally, a challenge should be linked to a GitHub issue in an already existent package/repository\n\n# Website\n\n- link to pkgdown website: https://helenalc.github.io/BiocSpatialChallenges\n\n# BiocChallenges\n\nThis project is inspired to the main project [BiocChallenges](https://kevinrue.github.io/BiocChallenges/) and it could be \nmerged into it in the future.","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhelenalc%2Fbiocspatialchallenges","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fhelenalc%2Fbiocspatialchallenges","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhelenalc%2Fbiocspatialchallenges/lists"}