{"id":16320112,"url":"https://github.com/helenalc/spatialdata","last_synced_at":"2026-03-09T12:39:13.161Z","repository":{"id":157291869,"uuid":"633398664","full_name":"HelenaLC/SpatialData","owner":"HelenaLC","description":null,"archived":false,"fork":false,"pushed_at":"2025-02-28T11:16:59.000Z","size":183892,"stargazers_count":17,"open_issues_count":17,"forks_count":7,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-03-23T20:36:53.470Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/HelenaLC.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-04-27T12:14:19.000Z","updated_at":"2025-02-28T11:17:04.000Z","dependencies_parsed_at":"2024-11-09T18:22:40.525Z","dependency_job_id":"fa00c152-4609-4b18-a557-b7c1bc5e6eae","html_url":"https://github.com/HelenaLC/SpatialData","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/HelenaLC%2FSpatialData","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/HelenaLC%2FSpatialData/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/HelenaLC%2FSpatialData/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/HelenaLC%2FSpatialData/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/HelenaLC","download_url":"https://codeload.github.com/HelenaLC/SpatialData/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248087749,"owners_count":21045583,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-10-10T22:29:06.653Z","updated_at":"2026-03-09T12:39:08.120Z","avatar_url":"https://github.com/HelenaLC.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"# `SpatialData`\n\n\u003e for a demo of the class, see the [vignette](https://htmlpreview.github.io/?https://github.com/HelenaLC/SpatialData/blob/main/vignettes/SpatialData.html)\n\n\u003e for visualization capabilites, see [`SpatialData.plot`](https://github.com/HelenaLC/SpatialData.plot)\n\n\u003e for data reading/writing and examples, see [`SpatialData.data`](https://github.com/HelenaLC/SpatialData.data)\n\n# Introduction\n\n`SpatialData` provides an interface to Python's `SpatialData`, and currently includes:\n\n- reticulate-based use of `spatialdata-io` for reading of manufacturer data and writing to .zarr\n- on-disk representation of images/labels as `ZarrArray`s (`Rarr`) and shapes/points as `arrow` objects\n- method drafts for visualization and coordinate system handling\n\nIn addition, *scverse* data examples have been made available through \nBioconductor's NSF OSN bucket, are accessible from within R, and `BiocFileCache`d; \nthere's also an interface to aligning data into a common (identity) space.\n\n# Installation\n\n```\nBiocManager::install(\"HelenaLC/SpatialData\")\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhelenalc%2Fspatialdata","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fhelenalc%2Fspatialdata","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhelenalc%2Fspatialdata/lists"}