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Bioinformatics and data science!\u003c/u\u003e\n\nHome: https://github.com/hermanzhaozzzz/bioat\n\nLicense: Apache-2.0\n\n| Name | Downloads | Version | Platforms | Test |\n| --- | --- | --- | --- | --- |\n|[![Conda Recipe](https://img.shields.io/badge/recipe-bioat-green.svg)](https://anaconda.org/conda-forge/bioat) | [![Conda Downloads](https://img.shields.io/conda/dn/conda-forge/bioat.svg)](https://anaconda.org/conda-forge/bioat) | [![Conda Version](https://img.shields.io/conda/vn/conda-forge/bioat.svg)](https://anaconda.org/conda-forge/bioat) | [![Conda Platforms](https://img.shields.io/conda/pn/conda-forge/bioat.svg)](https://anaconda.org/conda-forge/bioat) | [![Azure Pipelines](https://dev.azure.com/conda-forge/feedstock-builds/_apis/build/status/bioat-feedstock?branchName=main)](https://dev.azure.com/conda-forge/feedstock-builds/_build/latest?definitionId=23719\u0026branchName=main) |\n\n## About author\nName: [赵华男 | Huanan Herman Zhao](https://scholar.google.com/citations?user=ojSVoWQAAAAJ\u0026hl=en) |  EMail: hermanzhaozzzz AT gmail.com | [Zhihu](https://www.zhihu.com/people/hymanzhaozzzz) | [BLOG](http://zhaohuanan.cc)\n\n## Installation\n```shell\n# supported platform: Linux / MacOS (intel \u0026 arm64) / Windows\npip install --upgrade bioat\n# use conda\nconda install -c conda-forge bioat\n```\n\n## Usage\n```shell\n# list commands\nbioat list\n# check version\nbioat version\n# check information about bioat\nbioat about\n\n# example usage\nbioat bam remove_clip --help\nsamtools view -h test_sorted_n.bam | bioat bam remove_clip | tail\n```\n[circos plot](docs/demo_circos-plot.ipynb)\n\n## Doc\n\nSee [Doc](https://bioat.readthedocs.io/en/latest/)\n\n## Citation\n[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.15093444.svg)](https://doi.org/10.5281/zenodo.15093444)\n\n```latex\n@software{huanan_herman_zhao_2025_15093444,\n  author       = {Huanan Herman Zhao},\n  title        = {BioAT, a python package \\\u0026 command line toolkit for\n                   bioinformatics and data science\n                  },\n  month        = mar,\n  year         = 2025,\n  publisher    = {Zenodo},\n  doi          = {10.5281/zenodo.15093444},\n  url          = {https://doi.org/10.5281/zenodo.15093444},\n  swhid        = {swh:1:dir:19b60f4b0b93f490798727c05ab41a3222b555a1\n                   ;origin=https://doi.org/10.5281/zenodo.15093443;vi\n                   sit=swh:1:snp:793130e9e84df8cf427ab2b6a69c0dc77146\n                   1e6a;anchor=swh:1:rel:dc0fa360dfdaf99222cf7db99e8e\n                   e9e898ac1c64;path=hermanzhaozzzz-bioat-4b611f2\n                  },\n}\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhermanzhaozzzz%2Fbioat","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fhermanzhaozzzz%2Fbioat","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhermanzhaozzzz%2Fbioat/lists"}