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BigWig Data Fetcher for HiGlass\n\nQuickly load data from a bigwig file in HiGlass.\n\n[![HiGlass](https://img.shields.io/badge/higlass-🌸-brightgreen.svg)](http://higlass.io)\n\n\n## Usage\n\nThe live scripts can be found at:\n\n- https://unpkg.com/higlass-bigwig-datafetcher/dist/higlass-bigwig-datafetcher.min.js\n\nFirst, register the data fetcher:\n\n```js\nimport register from \"higlass-register\";\nimport { BigwigDataFetcher } from \"higlass-bigwig-datafetcher\";\n\nregister(\n  { dataFetcher: BigwigDataFetcher, config: BigwigDataFetcher.config },\n  { pluginType: \"dataFetcher\" }\n);\n```\n\nConfigure the track in your view config; you should be all set from here!\n\n```\n[...\n  {\n    \"type\": \"bar\",\n    \"height\": 80,\n    \"data\": {\n      \"type\": \"bbi\",\n      \"url\": \"https://aveit.s3.amazonaws.com/higlass/bigwig/example.chr1.10000-1160000.bw\",\n      \"chromSizesUrl\": \"https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.chrom.sizes\",\n    },\n    \"options\": {\n      ...\n    }\n    \n  }\n]\n```\n\nNote that the `chromSizesUrl` option is required.\n\nFor an example, see [`src/index.html`](src/index.html).\n\n### Basic authentication\n\nBigwig files may be hosted on a website that uses Basic authentication to limit access. To load data from a bigWig file hosted on a site that uses Basic authentication, add the username and password to the URL. For example: `http://username:password@example.com/data.bw`. This would be used in the view configuration `url` property, *e.g.*,:\n\n```\n[...\n  {\n    \"type\": \"bar\",\n    \"height\": 80,\n    \"data\": {\n      \"type\": \"bbi\",\n      \"url\": \"http://username:password@example.com/data.bw\",\n      \"chromSizesUrl\": \"https://aveit.s3.amazonaws.com/higlass/data/sequence/hg38.chrom.sizes\",\n    },\n    \"options\": {\n      ...\n    }\n    \n  }\n]\n```\n\n## Development\n\n### Testing\n\nTo run the test suite:\n\n```\nnpm run test\n```\n\n### Installation\n\n```bash\n$ git clone https://github.com/higlass/higlass-bigwig-datafetcher\n$ cd higlass-bigwig-datafetcher\n$ npm install\n```\n\nIf you have a local copy of higlass, you can then run this command in the higlass-bigwig-datafetcher directory:\n\n```bash\nnpm link higlass\n```\n\n### Commands\n\n- **Developmental server**: `npm start`\n- **Production build**: `npm run build`\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhiglass%2Fhiglass-bigwig-datafetcher","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fhiglass%2Fhiglass-bigwig-datafetcher","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhiglass%2Fhiglass-bigwig-datafetcher/lists"}