{"id":21662797,"url":"https://github.com/higlass/higlass-plugins","last_synced_at":"2025-07-06T22:03:38.985Z","repository":{"id":57264211,"uuid":"409060139","full_name":"higlass/higlass-plugins","owner":"higlass","description":null,"archived":false,"fork":false,"pushed_at":"2021-11-01T04:20:09.000Z","size":509,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-02-27T02:18:46.129Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/higlass.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2021-09-22T04:09:46.000Z","updated_at":"2021-11-01T04:20:12.000Z","dependencies_parsed_at":"2022-08-25T02:51:58.333Z","dependency_job_id":null,"html_url":"https://github.com/higlass/higlass-plugins","commit_stats":null,"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/higlass%2Fhiglass-plugins","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/higlass%2Fhiglass-plugins/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/higlass%2Fhiglass-plugins/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/higlass%2Fhiglass-plugins/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/higlass","download_url":"https://codeload.github.com/higlass/higlass-plugins/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":244560373,"owners_count":20472219,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-25T10:18:06.832Z","updated_at":"2025-03-20T05:48:55.686Z","avatar_url":"https://github.com/higlass.png","language":"HTML","funding_links":[],"categories":[],"sub_categories":[],"readme":"# HiGlass Plugins\n\nA collection of popular / useful higlass plugins.\n\n**Note**: This is the source code for the plugins only! You might want to check out the following repositories as well:\n\n- HiGlass viewer: https://github.com/higlass/higlass\n- HiGlass server: https://github.com/higlass/higlass-server\n- HiGlass docker: https://github.com/higlass/higlass-docker\n\n## Included tracks\n\n- [higlass-pileup](https://github.com/higlass/higlass-pileup)\n- [higlass-multivec](https://github.com/higlass/higlass-multivec)\n- [higlass-labelled-points-track](https://github.com/higlass/higlass-labelled-points-track)\n- [higlass-arcs](https://github.com/higlass/higlass-arcs)\n- [higlass-transcripts](https://github.com/higlass/higlass-transcripts/)\n- [higlass-dynseq](https://github.com/kundajelab/higlass-dynseq)\n\n## Installation\n\n```\nnpm install higlass-plugins\n```\n\n## Usage\n\nThe live scripts can be found at:\n\n- https://unpkg.com/higlass-plugins/dist/higlass-plugins.min.js\n\n### Client\n\n1. Make sure you load this component prior to `hglib.js`. For example:\n\n```\n\u003cscript src=\"/higlass-plugins.js\"\u003e\u003c/script\u003e\n\u003cscript src=\"hglib.js\"\u003e\u003c/script\u003e\n\u003cscript\u003e\n  ...\n\u003c/script\u003e\n```\n\n2. Now, configure the track in your view config and be happy!\n\n```\n{\n  \"editable\": true,\n  \"trackSourceServers\": [\n    \"http://higlass.io/api/v1\"\n  ],\n  \"exportViewUrl\": \"/api/v1/viewconfs\",\n  \"views\": [\n    {\n      \"initialXDomain\": [\n        0,\n        100000\n      ],\n      \"tracks\": {\n        \"top\": [\n          {\n            \"type\": \"pileup\",\n            \"options\": {\n              \"axisPositionHorizontal\": \"right\",\n              \"axisLabelFormatting\": \"normal\",\n              \"showCoverage\": false,\n              \"colorScale\": [\n                // A T G C N Other\n                \"#2c7bb6\",\n                \"#92c5de\",\n                \"#ffffbf\",\n                \"#fdae61\",\n                \"#808080\",\n                \"#DCDCDC\"\n              ]\n            },\n            \"height\": 180,\n            \"uid\": \"FylkvVBTSumoJ959HT4-5A\",\n            \"data\": {\n              \"type\": \"bam\",\n              \"url\": \"https://pkerp.s3.amazonaws.com/public/bamfile_test/SRR1770413.sorted.bam\",\n              \"chromSizesUrl\": \"https://pkerp.s3.amazonaws.com/public/bamfile_test/GCF_000005845.2_ASM584v2_genomic.chrom.sizes\"\n            },\n            \"width\": 470\n          }\n        ]\n      },\n      \"layout\": {\n        \"w\": 12,\n        \"h\": 6,\n        \"x\": 0,\n        \"y\": 0\n      }\n    }\n  ]\n}\n```\n\n## Support\n\nFor questions, please either open an issue or ask on the HiGlass Slack channel at http://bit.ly/higlass-slack\n\n## Development\n\n### Installation\n\n```bash\n$ git clone https://github.com/higlass/higlass-plugins \u0026\u0026 higlass-plugins\n$ npm install\n```\n\n### Commands\n\n**Developmental server**: `npm start`\n**Production build**: `npm run build`\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhiglass%2Fhiglass-plugins","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fhiglass%2Fhiglass-plugins","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhiglass%2Fhiglass-plugins/lists"}