{"id":17649998,"url":"https://github.com/hrs/primer-finder","last_synced_at":"2026-02-23T05:01:44.345Z","repository":{"id":42617694,"uuid":"47992692","full_name":"hrs/primer-finder","owner":"hrs","description":"Web application for selecting primers.","archived":false,"fork":false,"pushed_at":"2022-12-14T02:05:26.000Z","size":145,"stargazers_count":2,"open_issues_count":13,"forks_count":2,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-10-11T16:08:13.602Z","etag":null,"topics":["biology","rails","ruby"],"latest_commit_sha":null,"homepage":"https://primer-finder.herokuapp.com/","language":"Ruby","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/hrs.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-12-14T18:13:10.000Z","updated_at":"2022-05-19T03:53:21.000Z","dependencies_parsed_at":"2023-01-28T16:16:13.791Z","dependency_job_id":null,"html_url":"https://github.com/hrs/primer-finder","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/hrs/primer-finder","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hrs%2Fprimer-finder","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hrs%2Fprimer-finder/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hrs%2Fprimer-finder/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hrs%2Fprimer-finder/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/hrs","download_url":"https://codeload.github.com/hrs/primer-finder/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hrs%2Fprimer-finder/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29738083,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-23T04:51:08.365Z","status":"ssl_error","status_checked_at":"2026-02-23T04:49:15.865Z","response_time":90,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["biology","rails","ruby"],"created_at":"2024-10-23T11:34:36.415Z","updated_at":"2026-02-23T05:01:44.317Z","avatar_url":"https://github.com/hrs.png","language":"Ruby","funding_links":[],"categories":[],"sub_categories":[],"readme":"## PrimerFinder [![Build Status](https://secure.travis-ci.org/hrs/primer-finder.png?branch=master\u0026.png)](http://travis-ci.org/hrs/primer-finder) [![Coverage Status](https://coveralls.io/repos/github/hrs/primer-finder/badge.svg?branch=master)](https://coveralls.io/github/hrs/primer-finder?branch=master) [![Code Climate](https://codeclimate.com/github/hrs/primer-finder/badges/gpa.svg)](https://codeclimate.com/github/hrs/primer-finder)\n\nA simple web app for searching lists of primers to find the ones that bind the\nbest to a target region.\n\nAn instance is freely available for use at https://primer-finder.herokuapp.com.\n\n### Setting up a development environment\n\nPrimerFinder is written in Ruby using the [Rails][] framework.\n\nFirst, make sure you've got the version of Ruby specified in the [Gemfile][]. As\nof this writing, that's 2.2.4. You'll almost certainly want to use a Ruby\nversion manager to install and manage different versions of the language. I\n(@hrs) like to use [chruby][] with [ruby-install][], but [RVM][] and [rbenv][]\nare also popular.\n\nYou can check your Ruby version with `ruby -v`.\n\nWe use [bundler][] to manage library dependencies. Install the necessary libraries\n(\"gems\") specified in the [Gemfile][] by running:\n\n```sh\n$ gem install bundler\n$ bundle\n```\n\nAfter setting up, you can run the application using [Heroku Local][]:\n\n```sh\n$ heroku local\n```\n\n[Rails]: http://rubyonrails.org/\n[Gemfile]: https://github.com/hrs/primer-finder/blob/master/Gemfile\n[chruby]: https://github.com/postmodern/chruby\n[ruby-install]: https://github.com/postmodern/ruby-install\n[RVM]: https://rvm.io/\n[rbenv]: https://github.com/rbenv/rbenv\n[bundler]: http://bundler.io/\n[Heroku Local]: https://devcenter.heroku.com/articles/heroku-local\n\n### Running tests\n\nOnce you've set up your dev environment, you should be able to run the tests!\nPrimerFinder has a small suite of unit and feature tests. Run them with:\n\n```sh\n$ rake\n```\n\n### Deployment\n\nThe canonical instance of PrimerFinder is hosted on [Heroku][]. It should be\nfairly easy to deploy your own copy there, if you'd like to:\n\n* Create a new Heroku instance.\n* Associate it with your local repository.\n* `git push heroku master`\n\nEverything *should* just work.\n\n[Heroku]: https://heroku.com\n\n### Licensing\n\nPrimerFinder's licensed under the [GNU General Public License][].\n\n[GNU General Public License]: https://github.com/hrs/primer-finder/blob/master/LICENSE.md\n\n### Guidelines\n\nUse the following guides for getting things done, programming well, and\nprogramming in style.\n\n* [Protocol](http://github.com/thoughtbot/guides/blob/master/protocol)\n* [Best Practices](http://github.com/thoughtbot/guides/blob/master/best-practices)\n* [Style](http://github.com/thoughtbot/guides/blob/master/style)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhrs%2Fprimer-finder","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fhrs%2Fprimer-finder","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhrs%2Fprimer-finder/lists"}