{"id":24562564,"url":"https://github.com/humanbrainproject/neuroglancer-scripts","last_synced_at":"2025-06-30T01:33:14.344Z","repository":{"id":11622466,"uuid":"70147537","full_name":"HumanBrainProject/neuroglancer-scripts","owner":"HumanBrainProject","description":"Conversion of neuroimaging data for display in Neuroglancer","archived":false,"fork":false,"pushed_at":"2024-12-05T16:59:27.000Z","size":484,"stargazers_count":28,"open_issues_count":5,"forks_count":18,"subscribers_count":15,"default_branch":"master","last_synced_at":"2025-06-26T12:16:00.733Z","etag":null,"topics":["neuroimaging"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/HumanBrainProject.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-10-06T11:26:17.000Z","updated_at":"2025-05-20T23:01:09.000Z","dependencies_parsed_at":"2024-06-19T13:33:35.176Z","dependency_job_id":"fd4868bd-776e-4daf-9bca-5b2ed410113f","html_url":"https://github.com/HumanBrainProject/neuroglancer-scripts","commit_stats":{"total_commits":330,"total_committers":7,"mean_commits":"47.142857142857146","dds":0.4484848484848485,"last_synced_commit":"33c8a695d02df19d5b694761f413fe853daf9e9e"},"previous_names":[],"tags_count":6,"template":false,"template_full_name":null,"purl":"pkg:github/HumanBrainProject/neuroglancer-scripts","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/HumanBrainProject%2Fneuroglancer-scripts","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/HumanBrainProject%2Fneuroglancer-scripts/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/HumanBrainProject%2Fneuroglancer-scripts/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/HumanBrainProject%2Fneuroglancer-scripts/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/HumanBrainProject","download_url":"https://codeload.github.com/HumanBrainProject/neuroglancer-scripts/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/HumanBrainProject%2Fneuroglancer-scripts/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":262693309,"owners_count":23349714,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["neuroimaging"],"created_at":"2025-01-23T09:16:15.606Z","updated_at":"2025-06-30T01:33:14.313Z","avatar_url":"https://github.com/HumanBrainProject.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"neuroglancer-scripts\n====================\n\nTools for converting volumetric images and surface meshes to the pre-computed format of Neuroglancer_.\n\n\n.. image:: https://img.shields.io/pypi/v/neuroglancer-scripts.svg\n   :target: https://pypi.python.org/pypi/neuroglancer-scripts\n   :alt: PyPI Version\n\n.. image:: https://github.com/HumanBrainProject/neuroglancer-scripts/actions/workflows/tox.yaml/badge.svg\n   :target: https://github.com/HumanBrainProject/neuroglancer-scripts/actions/workflows/tox.yaml\n   :alt: Build Status\n\n.. image:: https://codecov.io/gh/HumanBrainProject/neuroglancer-scripts/branch/master/graph/badge.svg\n   :target: https://codecov.io/gh/HumanBrainProject/neuroglancer-scripts\n   :alt: Coverage Status\n\n.. image:: https://readthedocs.org/projects/neuroglancer-scripts/badge/?version=latest\n   :target: http://neuroglancer-scripts.readthedocs.io/en/latest/?badge=latest\n   :alt: Documentation Status\n\n\nInstallation\n------------\n\nThe easiest way to install the latest stable version of neuroglancer-scripts is\nthrough ``pip``. Using a virtual environment is recommended:\n\n.. code-block:: shell\n\n   python3 -m venv venv/\n   . venv/bin/activate\n   pip install neuroglancer-scripts\n\n\nUsage\n-----\n\nSee the `documentation \u003chttp://neuroglancer-scripts.readthedocs.io/\u003e`_.\n\n\nDevelopment\n-----------\n\nThe code is hosted on https://github.com/HumanBrainProject/neuroglancer-scripts.\n\nUseful commands for development:\n\n.. code-block:: shell\n\n  git clone https://github.com/HumanBrainProject/neuroglancer-scripts.git\n\n  # Install in a virtual environment\n  cd neuroglancer-scripts\n  python3 -m venv venv/\n  . venv/bin/activate\n  pip install -e .[dev]\n\n  # Tests\n  pytest  # run tests\n  pytest --cov=neuroglancer_scripts --cov-report=html  # detailed test coverage report\n  tox  # run tests under all supported Python versions\n\n  # Please install pre-commit if you intend to contribute\n  pre-commit install  # install the pre-commit hook\n\n\nContributing\n============\n\nThis repository uses `pre-commit`_ to ensure that all committed code follows minimal quality standards. Please install it and configure it to run as a pre-commit hook in your local repository (see above). Also, please note that the code quality checks may need a more recent version of Python than that required by neuroglancer_scripts itself (\u003e 3.8 at the time of this writing).\n\n\n.. _Neuroglancer: https://github.com/google/neuroglancer\n.. _pre-commit: https://pre-commit.com/\n\n\nAcknowledgments\n===============\n\n`cloud-volume \u003chttps://github.com/seung-lab/cloud-volume\u003e`_ (BSD 3-Clause licensed) for compressed morton code and shard/minishard mask implementation.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhumanbrainproject%2Fneuroglancer-scripts","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fhumanbrainproject%2Fneuroglancer-scripts","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fhumanbrainproject%2Fneuroglancer-scripts/lists"}