{"id":26450406,"url":"https://github.com/ibchgenomic/bacterial-ko-phylogenomics","last_synced_at":"2025-03-18T15:25:52.297Z","repository":{"id":254178477,"uuid":"845687068","full_name":"IBCHgenomic/bacterial-KO-phylogenomics","owner":"IBCHgenomic","description":"analyzing bacterial genome based ontologies and phylogenomics informativeness ","archived":false,"fork":false,"pushed_at":"2024-08-21T20:17:43.000Z","size":2575,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-03-11T23:15:33.180Z","etag":null,"topics":["bioinformatics","bioinformatics-scripts","genome-analysis","genome-annotation","metagenomics","metagenomics-analysis","metagenomics-bioinformatics","metagenomics-data","phylogenomics","phylogenomics-pipeline"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/IBCHgenomic.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-08-21T18:21:29.000Z","updated_at":"2025-01-16T18:45:59.000Z","dependencies_parsed_at":"2024-08-21T22:42:42.414Z","dependency_job_id":null,"html_url":"https://github.com/IBCHgenomic/bacterial-KO-phylogenomics","commit_stats":null,"previous_names":["codecreatede/bacterial-ko-phylogenomics","applicativesystem/bacterial-ko-phylogenomics","sciencegenome/python-bacterial-ko-phylogenomics","sciencegenome/bacterial-ko-phylogenomics","ibchgenomic/bacterial-ko-phylogenomics"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/IBCHgenomic%2Fbacterial-KO-phylogenomics","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/IBCHgenomic%2Fbacterial-KO-phylogenomics/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/IBCHgenomic%2Fbacterial-KO-phylogenomics/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/IBCHgenomic%2Fbacterial-KO-phylogenomics/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/IBCHgenomic","download_url":"https://codeload.github.com/IBCHgenomic/bacterial-KO-phylogenomics/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":244247630,"owners_count":20422634,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bioinformatics","bioinformatics-scripts","genome-analysis","genome-annotation","metagenomics","metagenomics-analysis","metagenomics-bioinformatics","metagenomics-data","phylogenomics","phylogenomics-pipeline"],"created_at":"2025-03-18T15:25:51.442Z","updated_at":"2025-03-18T15:25:52.290Z","avatar_url":"https://github.com/IBCHgenomic.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# KO-phylogenomics\n\n- This repository contains the Python, and R code which i coded using the mathematical expression for the genome based ontologies annotation and the phylogenomics informativeness. - Although i coded this for plants and bacteria but this is applicable to any genome annotations.\n\nGaurav Sablok \\\nUniversity of Potsdam \\\nPotsdam,Germany \n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fibchgenomic%2Fbacterial-ko-phylogenomics","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fibchgenomic%2Fbacterial-ko-phylogenomics","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fibchgenomic%2Fbacterial-ko-phylogenomics/lists"}