{"id":26837009,"url":"https://github.com/ibchgenomic/evai-analyzer","last_synced_at":"2025-03-30T16:35:07.613Z","repository":{"id":284334038,"uuid":"947847409","full_name":"IBCHgenomic/eVai-analyzer","owner":"IBCHgenomic","description":"eVaianalyzer for human  genomics","archived":false,"fork":false,"pushed_at":"2025-03-25T10:28:12.000Z","size":851,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-03-25T11:30:28.792Z","etag":null,"topics":["cancer-diagnosis","cancer-genomics","cancer-research","patient-management","variant-analysis"],"latest_commit_sha":null,"homepage":"","language":"Rust","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/IBCHgenomic.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2025-03-13T10:42:46.000Z","updated_at":"2025-03-25T11:01:04.000Z","dependencies_parsed_at":"2025-03-25T11:41:05.708Z","dependency_job_id":null,"html_url":"https://github.com/IBCHgenomic/eVai-analyzer","commit_stats":null,"previous_names":["ibchgenomic/evai-analyzer"],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/IBCHgenomic%2FeVai-analyzer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/IBCHgenomic%2FeVai-analyzer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/IBCHgenomic%2FeVai-analyzer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/IBCHgenomic%2FeVai-analyzer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/IBCHgenomic","download_url":"https://codeload.github.com/IBCHgenomic/eVai-analyzer/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":246349678,"owners_count":20763211,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cancer-diagnosis","cancer-genomics","cancer-research","patient-management","variant-analysis"],"created_at":"2025-03-30T16:33:40.310Z","updated_at":"2025-03-30T16:35:07.603Z","avatar_url":"https://github.com/IBCHgenomic.png","language":"Rust","funding_links":[],"categories":[],"sub_categories":[],"readme":"# eVai-analyzer\n - eVai-analyzer for open genomics.\n - It analyzes the eVai output files for variant annotation to filtering, preparating user reports and database and restapi human genomics.\n - **new version coming with lots of new features**\n \n ```\n cargo build\n ```\n\n ```\n variantannotator\n\n Usage: eVaianalyzer \u003cCOMMAND\u003e\n\n Commands:\n  variant-analyzer  analyzer for the variants\n  variant-filter    filter the variants\n  variant-database  create variant database\n  gtf-analyze       analyze the corresponding gtf\n  variant-seq       prepare the variant seq annotation\n  download-genome   download the human genome\n  acmg-transcript   variant-transcriptids\n  sequence-profile  sequence profiling\n  help              Print this message or the help of the given subcommand(s)\n\n Options:\n  -h, --help     Print help\n  -V, --version  Print version\n \n ibch/eVai-analyzer » ./target/debug/eVaianalyzer variant-analyzer ./data-repo/sample1.tsv ./data-repo/sampletest.tsv\n ibch/eVai-analyzer » ./target/debug/eVaianalyzer variant-filter ./data-repo/sample1.tsv ./data-repo/sampletest.tsv TTT\n ibch/eVai-analyzer » ./target/debug/eVaianalyzer analyzer ./data-repo/sample1.tsv ./data-repo/sampletest.tsv\n ibch/eVai-analyzer » ./target/debug/eVaianalyzer filter ./data-repo/sample1.tsv ./data-repo/sampletest.tsv TTT\n ibch/eVai-analyzer » ./target/debug/eVaianalyzer acmg-transcript ./data-repo/sample1.tsv \n ibch/eVai-analyzer » ./target/debug/eVaianalyzer gtf-analyze ./data-repo/samplegtf.gtf\n ibch/eVai-analyzer » ./target/debug/eVaianalyzer download-genome yes\n ibch/eVai-analyzer » ./target/debug/eVaianalyzer sequence-profile ./data-repo/sample1.tsv ./data-repo/sample.fasta 10 10\n ibch/eVai-analyzer » ./target/debug/eVaianalyzer variant-seq ./data-repo/sample1.tsv ./data-repo/sample.fasta\n ```\n\n Gaurav Sablok \\\n Instytut Chemii Bioorganicznej \\\n Polskiej Akademii Nauk \\\n ul. Noskowskiego 12/14 | 61-704, Poznań \\\n Poland\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fibchgenomic%2Fevai-analyzer","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fibchgenomic%2Fevai-analyzer","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fibchgenomic%2Fevai-analyzer/lists"}