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It also reinstates organism names in trees constructed with IQ-TREE, retrieves host information about microorganisms, and prepares annotation datasets for further visualization in iTOL.\n\n## Table of contents\n\n- [Features](#features)\n- [Installation](#installation)\n- [Usage Guide](#usage-guide)\n- [Contributing](#contributing)\n- [Contact](#contact)\n\n|The Good 😎|The Bad 😒|The Ugly 🚮|\n|--------|-------|--------|\n|\u003cimg src=\"https://github.com/iliapopov17/Detailed-Sequences-for-Trees-Unblemished/blob/main/imgs/second%20tree.jpg\" width=\"100%\"\u003e|\u003cimg src=\"https://github.com/iliapopov17/Detailed-Sequences-for-Trees-Unblemished/blob/main/imgs/third%20tree.jpg\" width=\"100%\"\u003e|\u003cimg src=\"https://github.com/iliapopov17/Detailed-Sequences-for-Trees-Unblemished/blob/main/imgs/first%20tree.jpg\" width=\"100%\"\u003e|\n\nPhyloki allows easy and simple annotation of phylogenetic trees. See the examples above:\n- The best tree contains information about the hosts from which the virus was isolated and the full names of the viruses.\n- The so-so tree contains the same information, but is colour annotated with randomly generated colours.\n- The worst tree contains only accession numbers on its leaves.\n\n## Features\n### Sequence Downloading\n- Facilitates the retrieval of sequences from NCBI GenBank using specified accession numbers.\n### Metadata Fetching\n- Downloads metadata from NCBI GenBank (Accession Number; Organism Name; Country; Year; Host)\n### Organism Name Reintegration\n- Enhances IQ-TREE constructed trees by replacing accession numbers with the corresponding organism names for clarity and context.\n### Host Information Retrieval\n- Gathers host data for each microorganism, including the host's taxonomic order.\n### Annotation Dataset Preparation for iTOL\n- Utilizes the collected host information to prepare detailed annotation datasets, optimizing visualization in iTOL.\n\n## Installation\n\n```python\npip install phyloki\n```\n\n## Usage Guide\n\nDemonstrational data is based on the recent paper about identifying novel hantavirus in bats\n\n🔗 Visit [Phyloki wiki](https://github.com/iliapopov17/phyloki/wiki) page\n\n## Contributing\nContributions are welcome! If you have any ideas, bug fixes, or enhancements, feel free to open an issue or submit a pull request.\n\n## Contact\nFor any inquiries or support, feel free to contact me via [email](mailto:iljapopov17@gmail.com)\n\nHappy tree annotating! 🌳\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Filiapopov17%2Fphyloki","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Filiapopov17%2Fphyloki","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Filiapopov17%2Fphyloki/lists"}