{"id":42005225,"url":"https://github.com/illustratien/toolphd","last_synced_at":"2026-01-26T01:37:39.546Z","repository":{"id":189123932,"uuid":"680060505","full_name":"Illustratien/toolPhD","owner":"Illustratien","description":"Make your analysis simple and reproducible","archived":false,"fork":false,"pushed_at":"2025-02-14T09:07:23.000Z","size":6518,"stargazers_count":0,"open_issues_count":3,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-02-14T10:23:34.457Z","etag":null,"topics":["academic","analysis","data","phd","publications","r","r-package","reproducible-research","scientific"],"latest_commit_sha":null,"homepage":"https://illustratien.github.io/toolPhD/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Illustratien.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-08-18T08:47:01.000Z","updated_at":"2025-02-14T09:07:27.000Z","dependencies_parsed_at":"2023-08-18T11:43:14.218Z","dependency_job_id":"cfc3a210-9fbd-42d5-8a9f-9083ae14c04a","html_url":"https://github.com/Illustratien/toolPhD","commit_stats":{"total_commits":63,"total_committers":3,"mean_commits":21.0,"dds":0.5238095238095238,"last_synced_commit":"530a6b76104761235c219f7d9d78d5576fe691ef"},"previous_names":["illustratien/toolphd"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/Illustratien/toolPhD","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Illustratien%2FtoolPhD","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Illustratien%2FtoolPhD/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Illustratien%2FtoolPhD/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Illustratien%2FtoolPhD/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Illustratien","download_url":"https://codeload.github.com/Illustratien/toolPhD/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Illustratien%2FtoolPhD/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":28764128,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-01-26T00:37:26.264Z","status":"ssl_error","status_checked_at":"2026-01-26T00:37:25.959Z","response_time":113,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["academic","analysis","data","phd","publications","r","r-package","reproducible-research","scientific"],"created_at":"2026-01-26T01:37:39.476Z","updated_at":"2026-01-26T01:37:39.535Z","avatar_url":"https://github.com/Illustratien.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"---\noutput: rmarkdown::github_document\nalways_allow_html: true\n---\n\u003c!-- README.md is generated from README.Rmd. Please edit that file --\u003e\n\n```{r, echo = FALSE,message=FALSE}\nknitr::opts_chunk$set(\n  collapse = TRUE,\n  comment = \"\",\n  fig.path = \"man/figures/\"\n)\nsuppressWarnings(devtools::load_all(\".\"))\n```\n\n\u003c!-- \u003cimg src=\"https://raw.githubusercontent.com/Illustratien/toolPhD/master/inst/extdata/toolPhD.png\" align=\"right\" alt=\"logo\" width=\"200\" height = \"200\" style = \"padding: 10px; border: none; float: right;\"\u003e --\u003e\n\n\n```{r,echo = FALSE, message = FALSE}\nsuppressWarnings(devtools::load_all(\".\"))\nwholetext \u003c-  packageDescription(\"toolPhD\", fields = \"Description\")\nSection\u003c- strsplit(wholetext,\"This R\")\ntext1 \u003c- Section[[1]][1]\ntext2 \u003c- unlist(strsplit(paste0(\"This R\",Section[[1]][2]),\"\\n\"))\n```\n## toolPhD: Accomplish your academic publication with ease and aesthetic.\n\n\u003c!-- Version : [`r getNamespaceVersion(\"toolPhD\")`](https://illustratien.github.io/toolPhD/articles/toolPhD.html#version-history); --\u003e\n\u003c!-- badges: start --\u003e\n[![License: GPL-3](https://img.shields.io/badge/License-GPL3-orange)](https://www.r-project.org/Licenses/)\n[![Website - pkgdown](https://img.shields.io/badge/website-tutorial-green)](https://illustratien.github.io/toolPhD/articles/toolPhD.html)\n[![Github Code Size](https://img.shields.io/github/languages/code-size/Illustratien/toolPhD.svg)](https://github.com/Illustratien/toolPhD)\n[![Last-changedate](https://img.shields.io/badge/last%20change-`r gsub('-', '--', Sys.Date())`-yellowgreen.svg)](https://github.com/Illustratien/toolPhD/commits/master)\n[![minimal R version](https://img.shields.io/badge/R\u003e%3D-3.5.0-6666ff.svg?logo=R)](https://cran.r-project.org/)\n[![rstudio mirror downloads](https://cranlogs.r-pkg.org/badges/grand-total/toolPhD?color=green)](https://CRAN.R-project.org/package=toolPhD)\n\u003c!-- [![Codecov test coverage](https://codecov.io/gh/Illustratien/toolPhD/branch/master/graph/badge.svg)](https://app.codecov.io/gh/Illustratien/toolPhD?branch=master) --\u003e\n\u003c!-- [![.](https://raw.githubusercontent.com/vitr/google-analytics-beacon/master/static/badge-flat.gif)](https://github.com/Illustratien/google-analytics-beacon) --\u003e\n\n\n\u003c!-- badges: end --\u003e\n\n\u003c!-- ## Description --\u003e\n\u003c!-- `r packageDescription(\"toolPhD\", fields = \"Description\")` --\u003e\n\u003c!-- `r gsub(\"\\\\n\", \"  \", packageDescription(\"toolPhD\", fields = \"Description\"))` --\u003e\n\u003c!-- `r text1` `r \"There are functions in this package.\"` --\u003e\n\n\u003c!-- `r text2[1]` --\u003e\n\u003c!-- `r text2[2]` --\u003e\n\u003c!-- `r text2[3]` --\u003e\n\n\u003c!-- `r text2[4]` --\u003e\n\u003c!-- `r text2[5]` --\u003e\n\u003c!-- `r text2[6]` --\u003e\n## Introduction\n\u003cimg src=\"https://raw.githubusercontent.com/Illustratien/toolPhD/master/docs/toolPhD.png\" align=\"right\" alt=\"logo\" width=\"150\" height = \"150\" style = \"padding: 10px; border: none; float: right;\"\u003e\n\nThe package `toolPhD` is by-product of the journey of author's PhD. Hopefully you find these function also useful for you.\n\nFurther analysis for original publication using this package can be found in the link ([click here](https://github.com/Illustratien/Wang_2023_TAAG)).\n\n## Installation\n\u003c!-- The package can be installed from CRAN as follows: --\u003e\n\n\u003c!-- ```{r, eval=FALSE} --\u003e\n\u003c!-- install.packages('toolPhD', dependencies=TRUE) --\u003e\n\u003c!-- ``` --\u003e\n\nThe development version can be installed from github as follows:\n\n```{r, eval=FALSE}\nif (!require('devtools')) install.packages('devtools')\ndevtools::install_github(\"Illustratien/toolPhD\")\n# or\nif (!require('remotes')) install.packages('remotes')\nremotes::install_github(\"Illustratien/toolPhD\")\n```\n\nTo update the package:\n```{r, eval=FALSE}\ndetach(\"package:toolPhD\", unload = TRUE)\ndevtools::install_github(\"Illustratien/toolPhD\")\n```\n## Descriptions\nThere are many useful functions in this package. For detailed tutorial with examples and references, please click the side tab `Get started` for general tutorial and `Refernce` for individual function example.\n\nHere is an example for `violin_plot()`\n```{r}\nlibrary(toolPhD)\nlibrary(ggplot2)\nviolin_plot(mtcars,cyl,mpg,labx=\"Number of cylinders\",laby=\"Miles/gallon\")\n```\nUseful 1:1 line plot `plot_121()`\n```{r}\nlibrary(toolPhD)\nlibrary(ggplot2)\nplot_121(iris,Sepal.Length,Petal.Length,color=Species)\nplot_121(iris,Sepal.Length,Petal.Length)\n```\n\n\u003c!-- ## What's new --\u003e\n\u003c!-- To know whats new in this version type: --\u003e\n\n\u003c!-- ```{r, eval=FALSE} --\u003e\n\u003c!-- news(package='toolPhD') --\u003e\n\u003c!-- ``` --\u003e\n\n\n## Citing `toolPhD`\nTo cite the methods in the package please use:\nWang T (2023). toolPhD: Accomplish your academic publication with ease and aesthetic. R package version 0.1.0.\n\n```\n@Manual{,\n  title = {toolPhD: Pave your academic path with profession and aesthetic.},\n  author = {Tien-Cheng Wang},\n  year = {2023},\n  note = {R package version 0.1.0},\n}\n```\n\n\u003c!-- # ```{r, echo = FALSE} --\u003e\n\u003c!-- # detach(\"package:toolPhD\", unload=TRUE) --\u003e\n\u003c!-- # suppressPackageStartupMessages(library(toolPhD)) --\u003e\n\u003c!-- # cit \u003c- citation(\"toolPhD\") --\u003e\n\u003c!-- # yr \u003c- format(Sys.Date(), \"%Y\") --\u003e\n\u003c!-- # cit[1]$year \u003c- yr --\u003e\n\u003c!-- # oc \u003c- class(cit) --\u003e\n\u003c!-- #  --\u003e\n\u003c!-- # cit \u003c- unclass(cit) --\u003e\n\u003c!-- # attr(cit[[1]],\"textVersion\") \u003c- gsub(\"\\\\(\\\\)\", --\u003e\n\u003c!-- #                                      paste(\"\\\\(\", yr, \"\\\\)\", sep = \"\"), --\u003e\n\u003c!-- #                                      attr(cit[[1]],\"textVersion\")) --\u003e\n\u003c!-- # class(cit) \u003c- oc --\u003e\n\u003c!-- # cit --\u003e\n\u003c!-- ``` --\u003e\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fillustratien%2Ftoolphd","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fillustratien%2Ftoolphd","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fillustratien%2Ftoolphd/lists"}