{"id":20874448,"url":"https://github.com/imagingdatacommons/sliceridcbrowser","last_synced_at":"2025-05-12T15:30:32.669Z","repository":{"id":174823531,"uuid":"647552306","full_name":"ImagingDataCommons/SlicerIDCBrowser","owner":"ImagingDataCommons","description":"A 3D Slicer extension to support access to the content of NCI Imaging Data Commons","archived":false,"fork":false,"pushed_at":"2024-11-18T22:20:47.000Z","size":1134,"stargazers_count":6,"open_issues_count":14,"forks_count":5,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-04-01T06:52:30.251Z","etag":null,"topics":["3d-slicer-extension"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ImagingDataCommons.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-05-31T03:02:34.000Z","updated_at":"2025-03-10T21:41:16.000Z","dependencies_parsed_at":"2023-11-20T21:27:51.551Z","dependency_job_id":"c2b43b9f-8f6d-4b36-a1b3-28f086209f27","html_url":"https://github.com/ImagingDataCommons/SlicerIDCBrowser","commit_stats":null,"previous_names":["fedorov/sliceridcbrowser","imagingdatacommons/sliceridcbrowser"],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ImagingDataCommons%2FSlicerIDCBrowser","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ImagingDataCommons%2FSlicerIDCBrowser/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ImagingDataCommons%2FSlicerIDCBrowser/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ImagingDataCommons%2FSlicerIDCBrowser/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ImagingDataCommons","download_url":"https://codeload.github.com/ImagingDataCommons/SlicerIDCBrowser/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":253765726,"owners_count":21960778,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["3d-slicer-extension"],"created_at":"2024-11-18T06:32:38.833Z","updated_at":"2025-05-12T15:30:32.000Z","avatar_url":"https://github.com/ImagingDataCommons.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"3D Slicer IDC Browser extension\n===========\n\n![logo](https://github.com/ImagingDataCommons/SlicerIDCBrowser/blob/c9519809522aaac59bb65fb558b1197cf05c3e72/IDCBrowser/Resources/Icons/IDCBrowser.png?raw=true)\n\n\n## About\nIDCBrowser is a [3D Slicer](http://slicer.org/) extension for browsing and downloading DICOM files from [NCI Imaging Data Commons](https://imaging.datacommons.cancer.gov/).\n\n## Getting started\n\nYou will need to have a latest preview or stable 5.6.2 release of 3D Slicer, which you can donwload for your platform here: [https://download.slicer.org](https://download.slicer.org). You can next install the extension via 3D Slicer [Extensions Manager](https://slicer.readthedocs.io/en/latest/user_guide/extensions_manager.html). \n\nOnce the extension is installed, it provides interface to choose from any of the imaging collections available in Imaging Data Commons, and select and download imaging data at the patient, study or series level. \n\n[![SlicerIDCBrowser basics](https://img.youtube.com/vi/m_jfSTWIYvc/0.jpg)](https://www.youtube.com/watch?v=m_jfSTWIYvc)\n\nYou can also use this extension to download items (referred to by identifiers of the collection, patient, DICOM study or series) as shown in the demo below!\n\n[![SlicerIDCBrowser downloading](https://img.youtube.com/vi/_KQDL9JzMB4/0.jpg)](https://www.youtube.com/watch?v=_KQDL9JzMB4)\n\n## Development\n\nThis extension relies on the [`idc-index`](https://pypi.org/project/idc-index/) package for searching IDC and downloading IDC content. \n\nSee current status of the extension builds in the 3D Slicer Preview dashboard [here](https://slicer.cdash.org/index.php?project=SlicerPreview\u0026filtercount=1\u0026showfilters=1\u0026field1=buildname\u0026compare1=63\u0026value1=idcbrowser).\n\n## Acknowledgments\n\nThis project has been funded in whole or in part with Federal funds from the National Cancer Institute, National Institutes of Health, under Task Order No. HHSN26110071 under Contract No. HHSN261201500003l.\n\nThe overview of IDC is available in this open access publication. If you use IDC, please acknowledge us by citing it!\n\n\u003e Fedorov, A., Longabaugh, W. J. R., Pot, D., Clunie, D. A., Pieper, S., Aerts, H. J. W. L., Homeyer, A., Lewis, R., Akbarzadeh, A., Bontempi, D., Clifford, W., Herrmann, M. D., Höfener, H., Octaviano, I., Osborne, C., Paquette, S., Petts, J., Punzo, D., Reyes, M., Schacherer, D. P., Tian, M., White, G., Ziegler, E., Shmulevich, I., Pihl, T., Wagner, U., Farahani, K. \u0026 Kikinis, R. NCI Imaging Data Commons. Cancer Res. 81, 4188–4193 (2021). http://dx.doi.org/10.1158/0008-5472.CAN-21-0950\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fimagingdatacommons%2Fsliceridcbrowser","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fimagingdatacommons%2Fsliceridcbrowser","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fimagingdatacommons%2Fsliceridcbrowser/lists"}