{"id":28436000,"url":"https://github.com/immunogenomics/earlylate_rna_eqtl","last_synced_at":"2026-03-11T02:10:43.846Z","repository":{"id":278264642,"uuid":"927890872","full_name":"immunogenomics/EarlyLate_RNA_eQTL","owner":"immunogenomics","description":null,"archived":false,"fork":false,"pushed_at":"2025-02-18T20:44:22.000Z","size":24,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":10,"default_branch":"main","last_synced_at":"2025-09-02T03:51:02.982Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/immunogenomics.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2025-02-05T17:59:37.000Z","updated_at":"2025-02-18T20:44:26.000Z","dependencies_parsed_at":"2025-02-18T21:46:00.215Z","dependency_job_id":null,"html_url":"https://github.com/immunogenomics/EarlyLate_RNA_eQTL","commit_stats":null,"previous_names":["immunogenomics/earlylate_rna_eqtl"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/immunogenomics/EarlyLate_RNA_eQTL","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/immunogenomics%2FEarlyLate_RNA_eQTL","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/immunogenomics%2FEarlyLate_RNA_eQTL/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/immunogenomics%2FEarlyLate_RNA_eQTL/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/immunogenomics%2FEarlyLate_RNA_eQTL/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/immunogenomics","download_url":"https://codeload.github.com/immunogenomics/EarlyLate_RNA_eQTL/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/immunogenomics%2FEarlyLate_RNA_eQTL/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":30367811,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-03-10T21:41:54.280Z","status":"online","status_checked_at":"2026-03-11T02:00:07.027Z","response_time":84,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-06-05T21:09:40.203Z","updated_at":"2026-03-11T02:10:43.825Z","avatar_url":"https://github.com/immunogenomics.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# EarlyLate_RNA_eQTL\n\nA code repository for custom scripts used in the analyses described in our manuscript \"**Early and late RNA eQTL are driven by different genetic mechanisms**\" (Sakaue et al.)\n\n### Table of Contents\n\n- 01_eQTL: cis-eQTL mapping\n- 02_finemap_coloc: finemapping and colocalization analyses between n-eQTL and c-eQTL\n- 03_diff_enrich: differential enrichment analyses to characterize genomic annotations preferentially enriched for statistically fine-mapped variants in either n-eQTL or c-eQTL\n- 04_disease_coloc: colocalization analyses between eQTL and disease GWAS (neuropsychiatric diseases)\n\n### Contact\n\nQuestions can be sent to Saori Sakaue (ssakaue@broadinstitute.org)","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fimmunogenomics%2Fearlylate_rna_eqtl","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fimmunogenomics%2Fearlylate_rna_eqtl","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fimmunogenomics%2Fearlylate_rna_eqtl/lists"}