{"id":28436057,"url":"https://github.com/immunogenomics/itc","last_synced_at":"2026-06-17T20:04:51.977Z","repository":{"id":100623541,"uuid":"165870580","full_name":"immunogenomics/itc","owner":"immunogenomics","description":"Scripts to analyze innate T cell transcriptomes","archived":false,"fork":false,"pushed_at":"2019-02-08T16:40:12.000Z","size":33,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":12,"default_branch":"master","last_synced_at":"2025-06-27T18:43:24.456Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/immunogenomics.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-01-15T15:01:35.000Z","updated_at":"2019-02-08T16:40:13.000Z","dependencies_parsed_at":"2023-05-16T10:15:43.664Z","dependency_job_id":null,"html_url":"https://github.com/immunogenomics/itc","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/immunogenomics/itc","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/immunogenomics%2Fitc","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/immunogenomics%2Fitc/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/immunogenomics%2Fitc/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/immunogenomics%2Fitc/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/immunogenomics","download_url":"https://codeload.github.com/immunogenomics/itc/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/immunogenomics%2Fitc/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":34463558,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-05-26T15:22:16.424Z","status":"online","status_checked_at":"2026-06-17T02:00:05.408Z","response_time":127,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-06-05T21:10:01.293Z","updated_at":"2026-06-17T20:04:51.965Z","avatar_url":"https://github.com/immunogenomics.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# itc\nScripts to analyze innate T cell transcriptomes from Gutierrez-Arcelus et al., Nature Communications, 2019 (doi.org/10.1038/s41467-019-08604-4).\n\nIn the low_input_rnaseq folder, you'll find a script to re-create the PCA that revealed the innateness gradient on PC1 (Fig. 2a-b).\n\nIn the single_cell_rnaseq folder, you'll find a script to re-create the PCA and UMAP of our single-cell RNA-seq data (Fig. 8b, Supplementary Fig. 15a)\n\nInput files are available as Supplement Files in GEO with accession number GSE124731.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fimmunogenomics%2Fitc","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fimmunogenomics%2Fitc","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fimmunogenomics%2Fitc/lists"}