{"id":19891896,"url":"https://github.com/inbo/inlatools","last_synced_at":"2025-05-02T18:31:32.800Z","repository":{"id":41415741,"uuid":"152081804","full_name":"inbo/inlatools","owner":"inbo","description":"An R package with useful functions to diagnose INLA models","archived":false,"fork":false,"pushed_at":"2024-10-04T11:21:04.000Z","size":8021,"stargazers_count":4,"open_issues_count":1,"forks_count":2,"subscribers_count":9,"default_branch":"main","last_synced_at":"2025-04-12T05:02:23.175Z","etag":null,"topics":["bayesian-statistics","gplv3","inla","mixed-models","model-checking","model-validation","r"],"latest_commit_sha":null,"homepage":"https://inbo.github.io/inlatools/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/inbo.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":".github/CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":".zenodo.json"}},"created_at":"2018-10-08T13:08:58.000Z","updated_at":"2024-10-04T11:20:45.000Z","dependencies_parsed_at":"2025-04-12T05:02:32.712Z","dependency_job_id":"f0357d90-1c17-4f54-857a-5c5a528e1e9f","html_url":"https://github.com/inbo/inlatools","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/inbo%2Finlatools","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/inbo%2Finlatools/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/inbo%2Finlatools/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/inbo%2Finlatools/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/inbo","download_url":"https://codeload.github.com/inbo/inlatools/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":252088463,"owners_count":21692798,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["bayesian-statistics","gplv3","inla","mixed-models","model-checking","model-validation","r"],"created_at":"2024-11-12T18:20:05.176Z","updated_at":"2025-05-02T18:31:27.792Z","avatar_url":"https://github.com/inbo.png","language":"R","readme":"# The `inlatools` package\n\n[![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)\n[![lifecycle](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html)\n[![Licence](https://img.shields.io/badge/licence-GPL--3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0.en.html)\n[![minimal R version](https://img.shields.io/badge/R%3E%3D-3.4.0-6666ff.svg)](https://cran.r-project.org/)\n[![codecov](https://app.codecov.io/gh/inbo/inlatools/branch/master/graph/badge.svg)](https://app.codecov.io/gh/inbo/inlatools)\n\n## Rationale\n\nThe `inlatools` package provides a set of function which can be useful to diagnose [INLA](https://www.r-inla.org/) models.\n\n- calculate Pearson residuals\n- simulation based checks for over- or underdispersion\n- simulation based checks for the distribution\n- visualise the effect of the variance or precision on random effects\n    - random intercept\n    - first order random walk\n    - second order random walk\n\n## Installation\n\n```r\nip \u003c- rownames(installed.packages())\nif (!\"remotes\" %in% ip) {\n  install.packages(\"remotes\")\n}\nif (!\"INLA\" %in% ip) {\n  install.packages(\n    \"INLA\", \n    repos = c(getOption(\"repos\"), \"https://inla.r-inla-download.org/R/stable\")\n  )\n}\nremotes::install_github(\"inbo/inlatools\")\n```\n\n## Documentation\n\nAll documentation is available at the package website: https://inlatools.netlify.app.\nThis website contains an [overview](https://inlatools.netlify.app/reference/index.html) of all available functions.\nClick on the name the function to open the corresponding help file.\nThe [vignettes](https://inlatools.netlify.app/articles/index.html) illustrate\n\n- how to [check the dispersion](https://inlatools.netlify.app/articles/dispersion.html)\n- how to [check the distribution](https://inlatools.netlify.app/articles/distribution.html) and\n- how to visualise [random effects](https://inlatools.netlify.app/articles/prior.html) for a given variance or precision.\n\n## Folder structure\n\n- `R`: The source scripts of the [R](https://cran.r-project.org/) functions with documentation in [Roxygen](https://github.com/r-lib/roxygen2) format\n- `man`: The helpfile in [Rd](https://cran.r-project.org/doc/manuals/r-release/R-exts.html#Rd-format) format\n- `test`: unit tests using the [`testthat`](https://testthat.r-lib.org/) framework\n- `vignettes`: the source code of the vignettes\n\n```\ninlatools\n├── man\n├── R\n├─┬ tests\n│ └── testthat\n└── vignettes\n```\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Finbo%2Finlatools","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Finbo%2Finlatools","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Finbo%2Finlatools/lists"}