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The shell script is standalone.\n\nThe input file is a newline delimited list of terms. See [tests/data/](tests/data/) for examples.\n\nThe first execution will take a minute or two; some warning messages\nmay be printed, these can be ignored. Two directories will be created: `RDF-Cache` and `.cache`\n\nSubsequent executions will be much faster\n\nYou can see example results in [scratch/vicc-results.tsv](scratch/vicc-results.tsv)\n\n## Python client\n\nFirst, start a service:\n\n`./neoplasmer.sh --port 9055`\n\nThen install python libs:\n\n```\npip3 install -r requirements.txt\n```\n\nRun the test client:\n\n```\npython3 bin/neoplasmer-client.py 'lung cancer' 'brain glioma'\n```\n\nTODO: additional documentation on how to this works\n\n## Running without docker\n\nInstall SWI-Prolog from http://www.swi-prolog.org\n\nRun directly using [bin/neoplasmer](bin/neoplasmer)\n\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fincatools%2Fneoplasmer","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fincatools%2Fneoplasmer","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fincatools%2Fneoplasmer/lists"}