{"id":21721448,"url":"https://github.com/informaticsmatters/docker_jupyter","last_synced_at":"2026-05-05T11:35:48.443Z","repository":{"id":80604997,"uuid":"105518760","full_name":"InformaticsMatters/docker_jupyter","owner":"InformaticsMatters","description":null,"archived":false,"fork":false,"pushed_at":"2020-04-19T16:51:34.000Z","size":3,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-01-25T18:43:21.305Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":null,"has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/InformaticsMatters.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2017-10-02T09:38:52.000Z","updated_at":"2020-09-07T02:32:35.000Z","dependencies_parsed_at":null,"dependency_job_id":"9de138ce-61a9-4f86-a854-dbf7974d4e0f","html_url":"https://github.com/InformaticsMatters/docker_jupyter","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/InformaticsMatters%2Fdocker_jupyter","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/InformaticsMatters%2Fdocker_jupyter/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/InformaticsMatters%2Fdocker_jupyter/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/InformaticsMatters%2Fdocker_jupyter/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/InformaticsMatters","download_url":"https://codeload.github.com/InformaticsMatters/docker_jupyter/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":244693826,"owners_count":20494515,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-26T02:16:56.580Z","updated_at":"2026-05-05T11:35:43.384Z","avatar_url":"https://github.com/InformaticsMatters.png","language":null,"funding_links":[],"categories":[],"sub_categories":[],"readme":"# Jupyter notebooks\n\nDockerfiles for building various flavours of Jupyter notebook\n\n1. Minimal notebook with latest RDKit release [Dockerfile-rdkit-release-latest](Dockerfile-rdkit-release-latest)\n1. Minimal notebook with latest RDKit beta [Dockerfile-rdkit-beta](Dockerfile-rdkit-beta) (Look at the deatils in [Anaconda](https://anaconda.org/rdkit/rdkit) for what this currently relates to)\n\nNOTE: these Docker images are quite large and take some time to download!\n\n## Running\n\nLaunch Jupyter with a command like this:\n```\ndocker run -p 8888:8888 -e NB_UID=501 -e NB_GID=20 --user root -v /path/to/your/jupyter_notebooks/:/home/jovyan/work informaticsmatters/rdkit_jupyter start-notebook.sh\n```\n\nThe NB_UID and NB_GID are specified so that files are created as your user ID. Adjust the values accordingly to match your user ID and group. The --user root is needed to allow the  NB_UID and NB_GID to be specified.\n\nAdjust `/path/to/your/jupyter_notebooks` to the location where yoy want your notebooks to be located on the host machine.\n\nWhen you run this command a link with a token is written to the console. Open this in your web browser and you should be up and running.\n\nNOTE: this approach is not suitable for publically facing machines. Additional security measures need to be put in place. See the Jupyter docs for more on this.\n\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Finformaticsmatters%2Fdocker_jupyter","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Finformaticsmatters%2Fdocker_jupyter","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Finformaticsmatters%2Fdocker_jupyter/lists"}