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by starred repositories"],"sub_categories":["Framework extensions"],"readme":"# teal.modules.clinical\n\n\u003c!-- start badges --\u003e\n[![CRAN Version](https://www.r-pkg.org/badges/version/teal.modules.clinical?color=green)](https://cran.r-project.org/package=teal.modules.clinical)\n[![Total Downloads](http://cranlogs.r-pkg.org/badges/grand-total/teal.modules.clinical?color=green)](https://cran.r-project.org/package=teal.modules.clinical)\n[![Last Month Downloads](http://cranlogs.r-pkg.org/badges/last-month/teal.modules.clinical?color=green)](https://cran.r-project.org/package=teal.modules.clinical)\n[![Last Week Downloads](http://cranlogs.r-pkg.org/badges/last-week/teal.modules.clinical?color=green)](https://cran.r-project.org/package=teal.modules.clinical)\n\n[![Check 🛠](https://github.com/insightsengineering/teal.modules.clinical/actions/workflows/check.yaml/badge.svg)](https://insightsengineering.github.io/teal.modules.clinical/main/unit-test-report/) [![Docs 📚](https://github.com/insightsengineering/teal.modules.clinical/actions/workflows/docs.yaml/badge.svg)](https://insightsengineering.github.io/teal.modules.clinical/)\n\n![GitHub forks](https://img.shields.io/github/forks/insightsengineering/teal.modules.clinical?style=social)\n![GitHub repo stars](https://img.shields.io/github/stars/insightsengineering/teal.modules.clinical?style=social)\n\n![GitHub commit activity](https://img.shields.io/github/commit-activity/m/insightsengineering/teal.modules.clinical)\n![GitHub contributors](https://img.shields.io/github/contributors/insightsengineering/teal.modules.clinical)\n![GitHub last commit](https://img.shields.io/github/last-commit/insightsengineering/teal.modules.clinical)\n![GitHub pull requests](https://img.shields.io/github/issues-pr/insightsengineering/teal.modules.clinical)\n![GitHub repo size](https://img.shields.io/github/repo-size/insightsengineering/teal.modules.clinical)\n![GitHub language count](https://img.shields.io/github/languages/count/insightsengineering/teal.modules.clinical)\n[![Project Status: Active -- The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)\n[![Current Version](https://img.shields.io/github/r-package/v/insightsengineering/teal.modules.clinical/main?color=purple\u0026label=package%20version)](https://github.com/insightsengineering/teal.modules.clinical/tree/main)\n[![Open Issues](https://img.shields.io/github/issues-raw/insightsengineering/teal.modules.clinical?color=red\u0026label=open%20issues)](https://github.com/insightsengineering/teal.modules.clinical/issues?q=is%3Aissue+is%3Aopen+sort%3Aupdated-desc)\n\u003c!-- end badges --\u003e\n\nThis package contains a set of standard `teal` modules to be used with `CDISC` data in order to generate many of the standard outputs used in clinical trials.\n\nThese modules include, but are not limited to:\n\n\u003c!-- markdownlint-disable MD007 MD030 --\u003e\n-   Data visualizations:\n    -   Forest plots (`tm_g_forest_rsp()`/`tm_g_forest_tte()`)\n    -   Line plots (`tm_g_lineplot()`)\n    -   Kaplan-Meier plots (`tm_g_km()`)\n    -   ...\n-   Statistical model fits:\n    -   MMRM (`tm_a_mmrm()`)\n    -   Logistic regression (`tm_t_logistic()`)\n    -   Cox regression (`tm_t_coxreg()`)\n    -   ...\n-   Summary tables:\n    -   Unique patients (`tm_t_summary()`)\n    -   Exposure across patients (`tm_t_exposure()`)\n    -   Change from baseline for parameters (`tm_t_summary_by()`)\n    -   ...\n-   Patient-level profile modules:\n    -   Table of basic information about chosen patient (`tm_t_pp_basic_info()`)\n    -   Plot of patient vitals over time (`tm_g_pp_vitals()`)\n    -   General timeline for individual patients (`tm_g_pp_patient_timeline()`)\n    -   ...\n\n\u003c!-- markdownlint-enable MD007 MD030 --\u003e\n\nMost modules in the package are implemented using functions from the R package [`tern`](https://insightsengineering.github.io/tern/) in order to produce their output.\n\nPlease see the [Teal Gallery](https://insightsengineering.github.io/teal.gallery/) and [TLG Catalog](https://insightsengineering.github.io/tlg-catalog/) for examples of `shiny` apps created using modules from this package.\n\n## Installation\n\n```r\ninstall.packages('teal.modules.clinical')\n```\n\nAlternatively, you might want to use the development version.\n\n```r\n# install.packages(\"pak\")\npak::pak(\"insightsengineering/teal.modules.clinical\")\n```\n\n## Usage\n\nTo understand how to use this package, please refer to the [Getting Started](https://insightsengineering.github.io/teal.modules.clinical/latest-tag/articles/teal-modules-clinical.html) article, which provides multiple examples of code implementation.\n\n## Playground\n\nYou can try out the package without installing it in the Shinylive:\n\n* [stable](https://shinylive.io/r/editor/#code=NobwRAdghgtgpmAXGKAHVA6ASmANGAYwHsIAXOMpMAGwEsAjAJykYE8AKcqajGIgEwCu1OAGcMBOhFoFuASgA6EMAF8AukA)\n* [development](https://shinylive.io/r/editor/#code=NobwRAdghgtgpmAXGKAHVA6ASmANGAYwHsIAXOMpMI1UgSxIGcAKAdzgCMAnAfVQGsA5jy5xURRgAIAvJILMAOmC4BaAK4Q6ANzhdGcJTMlKAFqVKpGiAPTXUJqFxhQdeuBlUbtu-RgAmcFpKuJKCcKQA8rQMEIpg7Nx8QiJiEkoAlJkKEAA2dNyOAJ7M5FA5GDBEfmo5cIwYBHmaBGXp2WAAvgC6QA)\n\n## Getting help\n\nIf you encounter a bug or have a feature request, please file an issue. For questions, discussions, and staying up to date, please use the `teal` channel in the [`pharmaverse` slack workspace](https://pharmaverse.slack.com).\n\n## Acknowledgment\n\nThis package is the result of the joint efforts of many developers and stakeholders. We would like to thank everyone who has contributed so far!\n\n## Stargazers and Forkers\n\n### Stargazers over time\n\n[![Stargazers over time](https://starchart.cc/insightsengineering/teal.modules.clinical.svg)](https://starchart.cc/insightsengineering/teal.modules.clinical)\n\n### Stargazers\n\n[![Stargazers repo roster for](https://reporoster.com/stars/insightsengineering/teal.modules.clinical)](https://github.com/insightsengineering/teal.modules.clinical/stargazers)\n\n### Forkers\n\n[![Forkers repo roster for](https://reporoster.com/forks/insightsengineering/teal.modules.clinical)](https://github.com/insightsengineering/teal.modules.clinical/network/members)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Finsightsengineering%2Fteal.modules.clinical","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Finsightsengineering%2Fteal.modules.clinical","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Finsightsengineering%2Fteal.modules.clinical/lists"}