{"id":28481497,"url":"https://github.com/insightsoftwareconsortium/simpleitkworkshopimagej2015","last_synced_at":"2025-07-04T17:31:00.914Z","repository":{"id":141050953,"uuid":"41119472","full_name":"InsightSoftwareConsortium/SimpleITKWorkshopImageJ2015","owner":"InsightSoftwareConsortium","description":"SimpleITK workshop material for the 2015 ImageJ Conference. http://imagej.net/Conference_2015","archived":false,"fork":false,"pushed_at":"2015-09-04T02:41:30.000Z","size":18812,"stargazers_count":3,"open_issues_count":0,"forks_count":3,"subscribers_count":9,"default_branch":"master","last_synced_at":"2025-06-30T15:24:32.659Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Shell","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/InsightSoftwareConsortium.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2015-08-20T21:21:27.000Z","updated_at":"2023-01-21T07:02:52.000Z","dependencies_parsed_at":"2023-03-13T10:39:25.000Z","dependency_job_id":null,"html_url":"https://github.com/InsightSoftwareConsortium/SimpleITKWorkshopImageJ2015","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/InsightSoftwareConsortium/SimpleITKWorkshopImageJ2015","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/InsightSoftwareConsortium%2FSimpleITKWorkshopImageJ2015","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/InsightSoftwareConsortium%2FSimpleITKWorkshopImageJ2015/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/InsightSoftwareConsortium%2FSimpleITKWorkshopImageJ2015/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/InsightSoftwareConsortium%2FSimpleITKWorkshopImageJ2015/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/InsightSoftwareConsortium","download_url":"https://codeload.github.com/InsightSoftwareConsortium/SimpleITKWorkshopImageJ2015/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/InsightSoftwareConsortium%2FSimpleITKWorkshopImageJ2015/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":263587925,"owners_count":23484831,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2025-06-07T20:07:32.964Z","updated_at":"2025-07-04T17:31:00.908Z","avatar_url":"https://github.com/InsightSoftwareConsortium.png","language":"Shell","readme":"\nImage Registration with SimpleITK\n=================================\n\n.. figure:: Data/ImageJConference2015.jpg\n   :alt: ImageJ Conference 2015\n\n   ImageJ Conference 2015\n2015 ImageJ User \u0026 Developer Conference\n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n\nMatt McCormick, PhD, Kitware, Inc\n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~\n\n|Circle CI|\n\n.. |Circle CI| image:: https://circleci.com/gh/InsightSoftwareConsortium/SimpleITKWorkshopImageJ2015.svg?style=svg\n   :target: https://circleci.com/gh/InsightSoftwareConsortium/SimpleITKWorkshopImageJ2015\n\nAbstract\n--------\n\n.. figure:: Data/SimpleITKLogo.jpg\n   :alt: SimpleITK\n\n   SimpleITK\nTo quantitatively compare the contents of two images, they must be\nspatially aligned. Image registration finds the spatial transformation\nthat aligns two images. This workshop presents\n`SimpleITK \u003chttp://simpleitk.org\u003e`__, the simplified interface to the\n`Insight Toolkit \u003chttp://itk.org\u003e`__, to perform 2D and 3D image\nregistration. With this programming library, which interoperates with\n`ImageJ \u003chttp://imagej.net/ImageJ\u003e`__/`Fiji \u003chttp://imagej.net/Fiji\u003e`__,\na spatial transformation between two images can be estimated. This\nspatial transformation can be quantified to learn about movement or\ndeformation in the images, or it can be used to resample one of the\nimages so that pixel-to-pixel content can be compared. Through\ninteractive examples in `Jupyter \u003chttp://jupyter.org/\u003e`__ notebooks, we\nwill explore and learn about the components of the registration\nframework and how they work together: transforms, interpolators,\nsimilarity metrics, and optimizers.\n\nTutorials\n---------\n\n1. `Introduction to the Insight Toolkit\n   (ITK) \u003c1_Introduction_to_the_Insight_Toolkit.ipynb\u003e`__\n2. `Working in Jupyter Notebooks \u003c2_Jupyter_Notebook.ipynb\u003e`__\n3. `Images and Physical Space \u003c3_Images_and_Physical_Space.ipynb\u003e`__\n4. `Resampling Images \u003c4_Resampling_Images.ipynb\u003e`__\n5. `Spatial Transformations \u003c5_Spatial_Transformations.ipynb\u003e`__\n6. `Similarity Metrics \u003c6_Similarity_Metrics.ipynb\u003e`__\n7. `Registration Optimization \u003c7_Registration_Optimization.ipynb\u003e`__\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Finsightsoftwareconsortium%2Fsimpleitkworkshopimagej2015","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Finsightsoftwareconsortium%2Fsimpleitkworkshopimagej2015","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Finsightsoftwareconsortium%2Fsimpleitkworkshopimagej2015/lists"}