{"id":15009039,"url":"https://github.com/insilichem/pychimera","last_synced_at":"2025-04-09T16:23:06.874Z","repository":{"id":62579273,"uuid":"50309940","full_name":"insilichem/pychimera","owner":"insilichem","description":"Use UCSF Chimera Python API in a standard interpreter","archived":false,"fork":false,"pushed_at":"2019-03-28T15:39:52.000Z","size":1488,"stargazers_count":58,"open_issues_count":4,"forks_count":10,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-03-23T18:38:52.250Z","etag":null,"topics":["conda-recipe","python-2","python27","ucsf-chimera"],"latest_commit_sha":null,"homepage":"http://pychimera.readthedocs.io","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"lgpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/insilichem.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2016-01-24T21:49:11.000Z","updated_at":"2024-11-03T09:08:40.000Z","dependencies_parsed_at":"2022-11-03T21:02:19.770Z","dependency_job_id":null,"html_url":"https://github.com/insilichem/pychimera","commit_stats":null,"previous_names":[],"tags_count":19,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/insilichem%2Fpychimera","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/insilichem%2Fpychimera/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/insilichem%2Fpychimera/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/insilichem%2Fpychimera/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/insilichem","download_url":"https://codeload.github.com/insilichem/pychimera/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248065757,"owners_count":21041959,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["conda-recipe","python-2","python27","ucsf-chimera"],"created_at":"2024-09-24T19:22:34.614Z","updated_at":"2025-04-09T16:23:06.853Z","avatar_url":"https://github.com/insilichem.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"PyChimera\n=========\n\n.. image:: https://travis-ci.org/insilichem/pychimera.svg?branch=master\n   :target: https://travis-ci.org/insilichem/pychimera\n   :alt: Travis CI status\n\n.. image:: https://ci.appveyor.com/api/projects/status/fwp3uum6be7tcfqn/branch/master?svg=true\n   :target: https://ci.appveyor.com/project/jaimergp/pychimera\n   :alt: AppVeyor status\n\n.. image:: https://readthedocs.org/projects/pychimera/badge/?version=latest\n   :target: http://pychimera.readthedocs.io/en/latest/?badge=latest\n   :alt: Documentation Status\n\n.. image:: https://img.shields.io/badge/doi-10.1093%2Fbioinformatics%2Fbty021-blue.svg\n   :target: http://dx.doi.org/10.1093/bioinformatics/bty021\n   :alt: Citation DOI\n\n.. image:: docs/img/pychimera.png\n\n**Use UCSF Chimera packages in any Python 2.7 interpreter**\n\n.. image:: docs/img/pychimera.gif\n\nWith PyChimera you can…\n\n-  Run scripts depending on chimera **from CLI** with ``pychimera script.py``.\n-  Enable ``import chimera`` in interactive coding sessions **outside UCSF Chimera**,\n   including IPython and Jupyter Notebooks.\n-  Launch a standard UCSF Chimera instance, with the benefit of importing all\n   your ``conda`` or ``virtualenv`` packages with ``pychimera --gui``.\n\nI hope it’s useful! Feedback is appreciated!\n\nDocumentation\n-------------\n\nThe updated documentation is always available at `readthedocs`_.\n\nAcknowledgments\n---------------\n\nLargely based on ideas by `Greg Couch at chimera-users`_.\n\n.. _UCSF Chimera: https://www.cgl.ucsf.edu/chimera/\n.. _latest UCSF Chimera: http://www.cgl.ucsf.edu/chimera/download.html\n.. _Greg Couch at chimera-users: http://www.cgl.ucsf.edu/pipermail/chimera-users/2015-January/010647.html\n.. _readthedocs: http://pychimera.readthedocs.io\n\nCitation\n--------\n\n.. image:: https://img.shields.io/badge/doi-10.1093%2Fbioinformatics%2Fbty021-blue.svg\n   :target: http://dx.doi.org/10.1093/bioinformatics/bty021\n\nPyChimera is scientific software, funded by public research grants\n(Spanish MINECO's project ``CTQ2014-54071-P``, Generalitat de Catalunya's\nproject ``2014SGR989`` and research grant ``2017FI_B2_00168``, COST Action ``CM1306``).\nIf you make use of PyChimera in scientific publications, please cite it. It will help\nmeasure the impact of our research and secure future funding!\n\n.. code-block:: latex\n\n   @article{pychimera2018,\n     author = {Rodríguez-Guerra Pedregal, Jaime and Maréchal, Jean-Didier},\n     title = {PyChimera: use UCSF Chimera modules in any Python 2.7 project},\n     journal = {Bioinformatics},\n     volume = {34},\n     number = {10},\n     pages = {1784-1785},\n     year = {2018},\n     doi = {10.1093/bioinformatics/bty021},\n     URL = {http://dx.doi.org/10.1093/bioinformatics/bty021},\n     eprint = {/oup/backfile/content_public/journal/bioinformatics/34/10/10.1093_bioinformatics_bty021/1/bty021.pdf}\n   }","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Finsilichem%2Fpychimera","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Finsilichem%2Fpychimera","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Finsilichem%2Fpychimera/lists"}