{"id":20930713,"url":"https://github.com/intermine/humanmine-bio-sources","last_synced_at":"2025-05-13T19:32:37.413Z","repository":{"id":44790152,"uuid":"120319312","full_name":"intermine/humanmine-bio-sources","owner":"intermine","description":"Data sources for HumanMine","archived":false,"fork":false,"pushed_at":"2024-10-12T11:03:50.000Z","size":2871,"stargazers_count":1,"open_issues_count":4,"forks_count":4,"subscribers_count":7,"default_branch":"master","last_synced_at":"2025-04-02T06:51:15.532Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/intermine.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2018-02-05T14:58:00.000Z","updated_at":"2021-11-12T13:14:45.000Z","dependencies_parsed_at":"2023-01-17T20:47:44.323Z","dependency_job_id":null,"html_url":"https://github.com/intermine/humanmine-bio-sources","commit_stats":null,"previous_names":[],"tags_count":7,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Fhumanmine-bio-sources","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Fhumanmine-bio-sources/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Fhumanmine-bio-sources/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Fhumanmine-bio-sources/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/intermine","download_url":"https://codeload.github.com/intermine/humanmine-bio-sources/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":254013134,"owners_count":21999365,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-18T21:35:51.459Z","updated_at":"2025-05-13T19:32:36.815Z","avatar_url":"https://github.com/intermine.png","language":"Java","funding_links":[],"categories":[],"sub_categories":[],"readme":"HumanMine\n============\n\nMaster: [![HumanMine bio sources CI](https://github.com/intermine/humanmine-bio-sources/workflows/HumanMine%20bio%20sources%20CI/badge.svg?branch=master)](https://github.com/intermine/humanmine-bio-sources/actions?query=workflow%3A%22HumanMine+bio+sources+CI%22)\n[![Version](http://img.shields.io/badge/version-2.0.0-blue.svg?style=flat)](https://github.com/intermine/intermine/releases)\n[![License](http://img.shields.io/badge/license-LGPL_2.1-blue.svg?style=flat)](https://github.com/intermine/intermine/blob/master/LICENSE)\n[![Research software impact](http://depsy.org/api/package/pypi/intermine/badge.svg)](http://depsy.org/package/python/intermine)\n[![Conda](https://anaconda.org/intermine/intermine/badges/installer/conda.svg)](https://anaconda.org/bioconda/intermine)\n\nThis is a repository of all the data parsers used to load human genomic data into an InterMine instance (HumanMine). These are humanmine-specific data, and in addition to the [core data parsers](http://intermine.readthedocs.io/en/latest/database/data-sources/library/) available in InterMine. See the [intermine-scripts](http://github.com/intermine/intermine-scripts) respository for the scripts we use to actually download the fly data.\n\n* [HumanMine](http://www.humanmine.org)\n* [User Docs](http://flymine.readthedocs.io/en/latest/)\n* [InterMine](http://www.intermine.org)\n* [InterMine Docs](http://intermine.readthedocs.io/en/latest/)\n\nCopyright and Licence\n------------------------\n\nCopyright (C) 2002-2018 InterMine\n\nSee [LICENSE](LICENSE) file for licensing information.\n\nThis product includes software developed by the\n[Apache Software Foundation][apache]\n\nPlease cite\n------------------------\n\n**InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data.**\u003cbr/\u003e\n*Smith RN, Aleksic J, Butano D, Carr A, Contrino S, Hu F, Lyne M, Lyne R, Kalderimis A, Rutherford K, Stepan R, Sullivan J, Wakeling M, Watkins X, Micklem G.* \u003cbr/\u003e\n[Bioinformatics (2012) 28 (23): 3163-3165.](http://bioinformatics.oxfordjournals.org/content/28/23/3163.abstract) \u003cbr/\u003e\n[![doi](http://img.shields.io/badge/doi-10.1093%2Fbioinformatics%2Fbts577-blue.svg?style=flat)](http://bioinformatics.oxfordjournals.org/content/28/23/3163.abstract) \n[![pubmed](http://img.shields.io/badge/pubmed-23023984-blue.svg?style=flat)](http://www.ncbi.nlm.nih.gov/pubmed/23023984)\n\n\n[readthedocs]: http://intermine.readthedocs.org/en/latest\n[tutorial]: http://intermine.readthedocs.org/en/latest/get-started/tutorial\n[psql]: http://www.postgresql.org\n[java]: http://openjdk.java.net\n[apache]: http://www.apache.org\n[tomcat]: http://tomcat.apache.org/download-70.cgi\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fintermine%2Fhumanmine-bio-sources","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fintermine%2Fhumanmine-bio-sources","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fintermine%2Fhumanmine-bio-sources/lists"}