{"id":20930677,"url":"https://github.com/intermine/intermine-ws-bio-ruby","last_synced_at":"2025-10-07T05:12:01.425Z","repository":{"id":1756521,"uuid":"2588746","full_name":"intermine/intermine-ws-bio-ruby","owner":"intermine","description":"Bio Extensions for the Ruby WS client","archived":false,"fork":false,"pushed_at":"2011-10-17T00:14:14.000Z","size":104,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-03-13T02:16:08.477Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"www.intermine.org","language":"Ruby","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"lgpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/intermine.png","metadata":{"files":{"readme":"README.rdoc","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2011-10-17T00:13:53.000Z","updated_at":"2014-01-18T08:41:05.000Z","dependencies_parsed_at":"2022-09-04T11:42:11.355Z","dependency_job_id":null,"html_url":"https://github.com/intermine/intermine-ws-bio-ruby","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/intermine/intermine-ws-bio-ruby","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Fintermine-ws-bio-ruby","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Fintermine-ws-bio-ruby/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Fintermine-ws-bio-ruby/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Fintermine-ws-bio-ruby/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/intermine","download_url":"https://codeload.github.com/intermine/intermine-ws-bio-ruby/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Fintermine-ws-bio-ruby/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":278722757,"owners_count":26034463,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-07T02:00:06.786Z","response_time":59,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-18T21:35:27.949Z","updated_at":"2025-10-07T05:12:01.404Z","avatar_url":"https://github.com/intermine.png","language":"Ruby","funding_links":[],"categories":[],"sub_categories":[],"readme":"= Biological Extensions to the InterMine Webservice Client Library \n\nThis library is a set of extensions to the InterMine Webservices client, \nproviding access for data in biological formats. It directly extends the \nInterMine classes, providing extra methods to the Query class.\n\n== Example\n\nGet all sequences for proteins on \"h\", \"r\", \"eve\", \"bib\" and \"zen\":\n\n    require \"rubygems\"\n    require \"intermine/service\"\n    require \"intermine/bio\"\n\n    s = Service.new(\"www.flymine.org/query\")\n    syms = %w{h r eve bib zen} \n\n    puts s.query(:Gene).select(:proteins).where(:symbol =\u003e syms).fasta\n\nProcess the locations of these genes one at a time:\n\n    s.query.select(:Gene).where(:symbol =\u003e syms).bed do |line|\n      process line\n    end\n\n== Who is this for?\n\nInterMine data warehouses are typically constructed to hold\nBiological data, and as this library facilitates programmatic\naccess to these data, this install is primarily aimed at \nbioinformaticians. In particular, users of the following services\nmay find it especially useful:\n * FlyMine (http://www.flymine.org/query)\n * YeastMine (http://yeastmine.yeastgenome.org/yeastmine)\n * RatMine (http://ratmine.mcw.edu/ratmine)\n * modMine (http://intermine.modencode.org/release-23)\n * metabolicMine (http://www.metabolicmine.org/beta)\n\nThese extensions are aimed at bioinformaticians looking to integrate\nthese sources of data into other workflows.\n\nFor details on constructing queries, see the intermine documentation.\n\n== Support\n\nSupport is available on our development mailing list: dev@intermine.org\n\n== License\n\nThis code is Open Source under the LGPL. Source code for all InterMine code\ncan be checked out from svn://subversion.flymine.org/flymine\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fintermine%2Fintermine-ws-bio-ruby","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fintermine%2Fintermine-ws-bio-ruby","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fintermine%2Fintermine-ws-bio-ruby/lists"}