{"id":20930630,"url":"https://github.com/intermine/interminer-workshop","last_synced_at":"2026-04-25T06:36:15.062Z","repository":{"id":87350137,"uuid":"191763196","full_name":"intermine/interminer-workshop","owner":"intermine","description":"InterMineR exercises for training workshops","archived":false,"fork":false,"pushed_at":"2020-07-19T12:47:23.000Z","size":422,"stargazers_count":1,"open_issues_count":3,"forks_count":1,"subscribers_count":0,"default_branch":"master","last_synced_at":"2025-12-30T14:33:08.656Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/intermine.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-06-13T12:56:09.000Z","updated_at":"2020-07-16T08:42:03.000Z","dependencies_parsed_at":null,"dependency_job_id":"7bd7a47d-24ee-4e1d-a2c4-81d3e7ce5442","html_url":"https://github.com/intermine/interminer-workshop","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/intermine/interminer-workshop","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Finterminer-workshop","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Finterminer-workshop/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Finterminer-workshop/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Finterminer-workshop/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/intermine","download_url":"https://codeload.github.com/intermine/interminer-workshop/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Finterminer-workshop/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":32253251,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-04-25T04:23:17.126Z","status":"ssl_error","status_checked_at":"2026-04-25T04:21:53.360Z","response_time":59,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.6:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-18T21:35:02.894Z","updated_at":"2026-04-25T06:36:14.854Z","avatar_url":"https://github.com/intermine.png","language":"Jupyter Notebook","funding_links":[],"categories":[],"sub_categories":[],"readme":"# InterMineR Workshop use-case, 2019\n\n## To run on Binder (no setup required):\n\n[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/intermine/interminer-workshop/master)\n\n## To run locally, we assume you have:\n\n### For the Pax6 Workshop workflows: \n- [Jupyter Notebook](https://jupyter.readthedocs.io/en/latest/install.html) installed\n- an [R kernel](https://irkernel.github.io/installation/) available\n- the [InterMineR R package](https://bioconductor.org/packages/release/bioc/html/InterMineR.html) installed. \n\n### For the Enrichment and Visualisations: \n- all of the items in the previous list, PLUS\n- See install.R for additional dependencies. You may wish to install them with BiocManager if you have a recent version of R (rather than BiocLite)\n\nOne these are all set up, clone this repo\n\n```bash\nhttps://github.com/intermine/interminer-workshop.git\n```\n\nThen move to the newly cloned directory, and run jupyter notebook: \n\n```bash\ncd interminer-workshop\njupyter notebook\n```\n\n## Questions, queries, comments?\n\nFeel free to [open an issue](https://github.com/intermine/interminer-workshop/issues) or [contact us](http://intermine.org/contact/)\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fintermine%2Finterminer-workshop","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fintermine%2Finterminer-workshop","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fintermine%2Finterminer-workshop/lists"}