{"id":20930661,"url":"https://github.com/intermine/neo4j-benchmark","last_synced_at":"2026-02-24T12:01:02.227Z","repository":{"id":136990324,"uuid":"61367549","full_name":"intermine/neo4j-benchmark","owner":"intermine","description":null,"archived":false,"fork":false,"pushed_at":"2017-03-23T10:41:26.000Z","size":4478,"stargazers_count":4,"open_issues_count":0,"forks_count":1,"subscribers_count":10,"default_branch":"master","last_synced_at":"2025-05-13T19:32:34.191Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/intermine.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2016-06-17T10:57:53.000Z","updated_at":"2023-06-24T04:35:59.000Z","dependencies_parsed_at":null,"dependency_job_id":"494665d2-6860-41f3-ba22-3f95fe430d9d","html_url":"https://github.com/intermine/neo4j-benchmark","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/intermine/neo4j-benchmark","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Fneo4j-benchmark","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Fneo4j-benchmark/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Fneo4j-benchmark/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Fneo4j-benchmark/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/intermine","download_url":"https://codeload.github.com/intermine/neo4j-benchmark/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/intermine%2Fneo4j-benchmark/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":286080680,"owners_count":29781202,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2026-02-24T10:45:18.109Z","status":"ssl_error","status_checked_at":"2026-02-24T10:45:09.911Z","response_time":75,"last_error":"SSL_connect returned=1 errno=0 peeraddr=140.82.121.5:443 state=error: unexpected eof while reading","robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":false,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-11-18T21:35:18.256Z","updated_at":"2026-02-24T12:01:02.204Z","avatar_url":"https://github.com/intermine.png","language":"Java","funding_links":[],"categories":[],"sub_categories":[],"readme":"# neo4j-benchmark\nThis repository contains:\n\nShell scripts to migrate data from postgres to neo4j:\n* script/generateExportScript.sh:read from the file given in input(containing the list of tables to be imported in neo4j) and generate the export.sql script (to export data from postgres)\n* script/generateImportScript.sh: generate the cypher/createNodes.cypher script to create nodes into neo4j\n* to run the sql script use the psql option \\i export.sql \n* to run the cypher scripts use the neo4j shell {neo4j dir}/bin/neo4j-shell -file createNodes.cypher\n\nSome scripts used to benchmark with a subset of flymine data:\n* script/sql/partial-flymine-export.sql: script to export part of flymine data into csv format files\n* some cypher scripts to import csv files into neo4j\n  * Before running the cypher scripts, copy *.csv under neo4j/import directory (or in neo4j.conf uncomment dbms.directories.import=import to load files from anywhere in filesystem)\n  * run the cypher scripts in the following order: import_flymine.cypher, import_flymine_homologue.cypher, import_flymine_location.cypher, import_flymine_located_on_relationship.cypher, import_flymine_overlaps_relationship.cypher\n  * to run the script: {neo4j home directory}/bin/neo4j-shell -file {path}/import_flymine.cypher\n* a curl-format text file to use some nice curl options in order to calculate the execution time:\n    * curl -w \"@curl-format.txt\" -s -i -X POST http://localhost:7474/db/data/transaction/commit -d '{\"statements\" : [ {\"statement\" : \"MATCH(g:Gene) RETURN g\"} ]}' -H \"Accept:application/json; charset=UTF-8\" -H \"Content-Type:application/json\" -o /dev/null\n\nNeo4j server extensions implementing orthologue and overlapping queries using neo4j Java API\n* after deploying on the server (read neo4j documentation)\n  * curl -w \"@curl-format.txt\" -s -i http://localhost:7474/examples/orthologue/api/tws\n  * curl -w \"@curl-format.txt\" -s -i http://localhost:7474/examples/overlapping/api/CG11566\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fintermine%2Fneo4j-benchmark","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fintermine%2Fneo4j-benchmark","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fintermine%2Fneo4j-benchmark/lists"}