{"id":17148541,"url":"https://github.com/iosonofabio/seqanpy","last_synced_at":"2025-04-13T11:42:04.330Z","repository":{"id":22767018,"uuid":"26112848","full_name":"iosonofabio/seqanpy","owner":"iosonofabio","description":"Fast pairwise sequence alignment using SeqAn, in Python.","archived":false,"fork":false,"pushed_at":"2019-03-23T18:56:22.000Z","size":33,"stargazers_count":13,"open_issues_count":0,"forks_count":7,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-03-27T02:51:18.236Z","etag":null,"topics":["pairwise-alignment","python","python-wrapper","seqan","sequence-alignment","swig"],"latest_commit_sha":null,"homepage":"","language":"C++","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/iosonofabio.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2014-11-03T09:56:37.000Z","updated_at":"2024-08-27T03:05:49.000Z","dependencies_parsed_at":"2022-08-21T12:00:50.119Z","dependency_job_id":null,"html_url":"https://github.com/iosonofabio/seqanpy","commit_stats":null,"previous_names":[],"tags_count":9,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/iosonofabio%2Fseqanpy","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/iosonofabio%2Fseqanpy/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/iosonofabio%2Fseqanpy/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/iosonofabio%2Fseqanpy/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/iosonofabio","download_url":"https://codeload.github.com/iosonofabio/seqanpy/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248441383,"owners_count":21103985,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["pairwise-alignment","python","python-wrapper","seqan","sequence-alignment","swig"],"created_at":"2024-10-14T21:28:58.538Z","updated_at":"2025-04-13T11:42:04.308Z","avatar_url":"https://github.com/iosonofabio.png","language":"C++","funding_links":[],"categories":[],"sub_categories":[],"readme":"[![Build Status](https://travis-ci.org/iosonofabio/seqanpy.svg?branch=master)](https://travis-ci.org/iosonofabio/seqanpy)\n[![PyPI version](https://badge.fury.io/py/seqanpy.svg)](https://pypi.org/project/seqanpy)\n\nFast pairwise sequence alignment using SeqAn, in Python.\n\n# REQUIREMENTS\n - [Python](https://www.python.org/) 2.7 or 3.3+.\n - A C++ 11 compiler, e.g. GCC 4.8+. If you are using SeqAn 2.2+ (see below), then you need a C++ 14 compiler, e.g. GCC 5.2+.\n - [SeqAn](http://www.seqan.de/) 1.4 or later. If you are using SeqAn 2.2+, then you need a C++ 14 compiler, e.g. GCC 5.2+.\n - [SWIG](http://www.swig.org/) 3 (there is a [branch](https://github.com/iosonofabio/seqanpy/tree/swig2) for SWIG 2)\n\n# INSTALL\nExport the environment variable `SEQAN_INCLUDE_PATH` to the parent folder of your seqan include folder. For instance, if your SeqAn headers are in `/usr/local/include/seqan`, set:\n\n```sh\nexport SEQAN_INCLUDE_PATH=/usr/local/include\n```\n\nIf your SWIG 3 is not executed by the standard `swig` command, e.g. because it is called `swig3` or because it is not in the `PATH`, just export another environment variable called `SWIG`, e.g.:\n\n```sh\nexport SWIG=swig3\n```\n\nNow you can use one of the following methods to install `seqanpy`.\n\n## Pip\n```sh\npip install seqanpy\n```\n\n## Setup.py (development version)\nClone the github repo. To install system-wide:\n\n```sh\npython2.7 setup.py install\n```\n\nTo install in the current folder:\n\n```sh\npython2.7 setup.py install --install-lib .\n```\n\nRemember to add the current folder to your `PYTHONPATH`.\n\nTo install to a specific folder, put your destination folder\nafter the --install-lib option. Remember to add that to your\n`PYTHONPATH`\n\n# USAGE\n```python\nimport seqanpy\nprint(seqanpy.align_global('ACCGGT', 'CCG'))\n```\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fiosonofabio%2Fseqanpy","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fiosonofabio%2Fseqanpy","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fiosonofabio%2Fseqanpy/lists"}