{"id":15017141,"url":"https://github.com/j-e-j-s/autograph-obsidian","last_synced_at":"2025-04-12T11:42:11.018Z","repository":{"id":62592284,"uuid":"367004550","full_name":"J-E-J-S/autograph-obsidian","owner":"J-E-J-S","description":"Automatic knowledge graph generation for Obsidian.md","archived":false,"fork":false,"pushed_at":"2023-09-13T09:02:10.000Z","size":92895,"stargazers_count":30,"open_issues_count":1,"forks_count":1,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-04-11T00:05:27.401Z","etag":null,"topics":["information","information-retrieval","information-visualization","knowledge-graph","mining","obsidian","obsidian-community","obsidian-md","obsidian-vault","scientific-publications"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/J-E-J-S.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2021-05-13T09:51:30.000Z","updated_at":"2025-03-31T21:35:39.000Z","dependencies_parsed_at":"2022-11-03T23:31:08.936Z","dependency_job_id":null,"html_url":"https://github.com/J-E-J-S/autograph-obsidian","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/J-E-J-S%2Fautograph-obsidian","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/J-E-J-S%2Fautograph-obsidian/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/J-E-J-S%2Fautograph-obsidian/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/J-E-J-S%2Fautograph-obsidian/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/J-E-J-S","download_url":"https://codeload.github.com/J-E-J-S/autograph-obsidian/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":248563668,"owners_count":21125324,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["information","information-retrieval","information-visualization","knowledge-graph","mining","obsidian","obsidian-community","obsidian-md","obsidian-vault","scientific-publications"],"created_at":"2024-09-24T19:49:56.615Z","updated_at":"2025-04-12T11:42:10.996Z","avatar_url":"https://github.com/J-E-J-S.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"# AutoGraph-Obsidian: Automated Knowledge Graph Generation.   \n\n## Introduction  \nAutoGraph is a tool that enables rapid, automated knowledge graph generation. AutoGraph does this by mining scientific literature against a search query for keywords. From this data, an Obsidian vault is made where each mined keyword has its own markdown file containing: i) the name of the paper the keyword was scraped from and ii) links to other keywords from that paper. When two papers share a keyword, a link is established between those articles through that term. Over many papers, this allows a network of interactions between articles in a field to be visualized. The purpose of this tool is not only to establish graph-based summaries of topics but also to identify hidden links between divergent fields - largely inspired by the works of [Manfred Kochen](https://dblp.org/pid/31/4553.html).\n\n\n## Prerequisites:  \n* [Python](https://www.python.org/downloads/) \u003e= 3.6  \n* [Obsidian.md](https://obsidian.md/)\n\n## Quickstart:\n```\npip3 install autograph-obsidian\n```\n\n## Usage:  \n```\nUsage: autograph [OPTIONS] QUERY\n\n  Arguments:\n\n  QUERY The main search string.\n\nOptions:\n  -l, --limit INTEGER  Number of papers to mine. Default = 500.\n  -v, --version        Show version number and exit.\n  --help               Show this message and exit.\n```\ne.g.\n```\nautograph 'Genetic Code Expansion' -l 100\n```\n## Case Study  \nGenerating the graph with autograph  \n\n![](/assets/autograph.gif)\n\nViewing the graph with Obsidian.md\n\n\n![](/assets/case_study.gif)\n\n## Acknowledgements  \nThe mining of scientific literature is handled by the [pygetpapers](https://github.com/petermr/pygetpapers) package developed by [ContentMine](https://contentmine.github.io/).\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fj-e-j-s%2Fautograph-obsidian","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fj-e-j-s%2Fautograph-obsidian","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fj-e-j-s%2Fautograph-obsidian/lists"}