{"id":24841373,"url":"https://github.com/j4c0bs/xfcs","last_synced_at":"2025-03-26T05:41:41.277Z","repository":{"id":57477882,"uuid":"98077385","full_name":"j4c0bs/xfcs","owner":"j4c0bs","description":"FCS (3.0, 3.1) data and metadata extractor","archived":false,"fork":false,"pushed_at":"2017-08-08T20:01:50.000Z","size":240,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":0,"default_branch":"master","last_synced_at":"2025-03-01T09:48:33.272Z","etag":null,"topics":["flow-cytometry","flow-cytometry-data"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-2-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/j4c0bs.png","metadata":{"files":{"readme":"README.rst","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2017-07-23T05:44:45.000Z","updated_at":"2017-09-05T21:42:02.000Z","dependencies_parsed_at":"2022-09-10T04:23:58.735Z","dependency_job_id":null,"html_url":"https://github.com/j4c0bs/xfcs","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/j4c0bs%2Fxfcs","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/j4c0bs%2Fxfcs/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/j4c0bs%2Fxfcs/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/j4c0bs%2Fxfcs/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/j4c0bs","download_url":"https://codeload.github.com/j4c0bs/xfcs/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":245598294,"owners_count":20641882,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["flow-cytometry","flow-cytometry-data"],"created_at":"2025-01-31T07:17:17.241Z","updated_at":"2025-03-26T05:41:41.250Z","avatar_url":"https://github.com/j4c0bs.png","language":"Python","funding_links":[],"categories":[],"sub_categories":[],"readme":"xfcs\n=======\nExtract metadata and data from FCS (3.0, 3.1) files.\n\nData extraction supports file formats:\n    - Mode: List (L)\n    - Datatypes: I, F, D\n\nImplemented parameter data set options:\n    - raw\n    - channel values\n    - scale values (log10, gain)\n    - channel and scale combined into one data set\n    - fluorescence compensation\n    - log10 scaled fluorescence compensation\n\nMetadata extraction features:\n    - support for non-compliant files\n    - merge or separate csv files\n    - rolling mean for any keyword with a numeric value\n    - append new fcs files to previously generated metadata csv file\n\n\nInteractive dashboard plots using the `xfcsdashboard \u003chttps://github.com/j4c0bs/xfcsdashboard\u003e`_ add-on module.\n  .. image:: docs/dashboard_preview.png\n\n\nInstallation\n------------\n\nUsing pip:\n\n::\n\n    pip install xfcs\n\nWithout pip:\n\n::\n\n    python setup.py install\n\nCommand Line Usage\n------------------\n\nSee\n`USAGE \u003chttps://github.com/j4c0bs/xfcs/blob/master/docs/usage.md\u003e`_\nfor expanded details.\n\nTo see a list of available commands and arguments, run ''xfcs data --help'' or ''xfcs metadata --help''\n\n::\n\n    extract data: xfcs data [options]\n    extract metadata: xfcs metadata [options]\n\nRequirements\n------------\n\n- Python 3.5 or greater\n- numpy\n- pandas\n\nLicense\n-------\n\nxfcs is released under the BSD 2-clause license. See\n`LICENSE \u003chttps://raw.githubusercontent.com/j4c0bs/xfcs/master/LICENSE.txt\u003e`_\nfor details.\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fj4c0bs%2Fxfcs","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fj4c0bs%2Fxfcs","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fj4c0bs%2Fxfcs/lists"}