{"id":22816295,"url":"https://github.com/janeliascicomp/funkeannotation","last_synced_at":"2025-10-16T10:56:35.947Z","repository":{"id":263035502,"uuid":"889133188","full_name":"JaneliaSciComp/FunkeAnnotation","owner":"JaneliaSciComp","description":"Small tool to annotate images","archived":false,"fork":false,"pushed_at":"2025-03-24T22:22:06.000Z","size":70,"stargazers_count":1,"open_issues_count":1,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-03-24T23:24:37.046Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/JaneliaSciComp.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-11-15T17:13:04.000Z","updated_at":"2025-03-24T22:20:30.000Z","dependencies_parsed_at":"2025-02-18T22:29:21.157Z","dependency_job_id":"ed0dcdb8-0f83-46a1-98b3-fa2a6f33bc8c","html_url":"https://github.com/JaneliaSciComp/FunkeAnnotation","commit_stats":null,"previous_names":["janeliascicomp/funkeannotation"],"tags_count":3,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JaneliaSciComp%2FFunkeAnnotation","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JaneliaSciComp%2FFunkeAnnotation/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JaneliaSciComp%2FFunkeAnnotation/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JaneliaSciComp%2FFunkeAnnotation/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JaneliaSciComp","download_url":"https://codeload.github.com/JaneliaSciComp/FunkeAnnotation/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":246390864,"owners_count":20769476,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":[],"created_at":"2024-12-12T14:07:07.226Z","updated_at":"2025-10-16T10:56:30.888Z","avatar_url":"https://github.com/JaneliaSciComp.png","language":"Java","funding_links":[],"categories":[],"sub_categories":[],"readme":"![example workflow](https://github.com/JaneliaSciComp/FunkeAnnotation/actions/workflows/maven.yml/badge.svg)\n\nSmall tool for annotating images.\n\n**Installation:**\n- download from [releases](https://github.com/JaneliaSciComp/FunkeAnnotation/releases) or build the tool using Maven `mvn clean package`\n- copy the JAR file to the Fiji plugins directory\n- the plugin will show up under Fiji \u003e Plugins \u003e Funke lab \u003e Annotator ...\n\n**Running in Phase 1:**\n- upon start it will ask for a directory that has to contain directories 'A', 'B', 'M'\n- each directory has to contain a series of png's [0...N].png\n\n\u003cimg width=\"993\" alt=\"Screenshot 2024-11-15 at 12 50 54 PM\" src=\"https://github.com/user-attachments/assets/7e1f26e0-da60-4665-a350-19f252159b32\"\u003e\n\n**Running in Phase 2:**\n\n- you need to additionally specify a JSON that contains the description of all features that can be annotated, e.g.:\n```\n{\n    \"DCV appearance\": {\n        \"-1\": \"One or more DCV has disappeared in B\",\n        \"0\": \"The same number of DCVs are present in B as in A\",\n        \"1\": \"One or more DCV has appeared in B\"\n    }, \n    \"DCV size\": {\n        \"-1\": \"One or more DCVs in B are smaller than in A\",\n        \"0\": \"One or more DCVs in B are the same size as in A\",\n        \"1\": \"One or more DCVs in B are larger than in A\"\n    }\n}\n```\n\u003cimg width=\"1151\" alt=\"Screenshot 2025-02-28 at 2 18 57 PM\" src=\"https://github.com/user-attachments/assets/0357d57d-929f-4aa9-88ce-41f12ad3e5d9\" /\u003e\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjaneliascicomp%2Ffunkeannotation","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fjaneliascicomp%2Ffunkeannotation","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjaneliascicomp%2Ffunkeannotation/lists"}