{"id":15018058,"url":"https://github.com/janeliascicomp/jrclust","last_synced_at":"2025-10-23T15:30:22.741Z","repository":{"id":56244689,"uuid":"104805943","full_name":"JaneliaSciComp/JRCLUST","owner":"JaneliaSciComp","description":"JRCLUST","archived":false,"fork":false,"pushed_at":"2024-05-01T13:33:28.000Z","size":82686,"stargazers_count":34,"open_issues_count":36,"forks_count":22,"subscribers_count":10,"default_branch":"main","last_synced_at":"2025-01-30T19:07:16.818Z","etag":null,"topics":["cluster","rocket","sorting","spike"],"latest_commit_sha":null,"homepage":"","language":"MATLAB","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/JaneliaSciComp.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.TXT","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2017-09-25T21:54:18.000Z","updated_at":"2024-07-09T18:36:34.000Z","dependencies_parsed_at":"2024-09-16T12:32:29.253Z","dependency_job_id":"d10fd7f3-7a84-4d34-ad02-1010f3092c54","html_url":"https://github.com/JaneliaSciComp/JRCLUST","commit_stats":{"total_commits":573,"total_committers":12,"mean_commits":47.75,"dds":"0.27050610820244325","last_synced_commit":"dd1f530744ab90cacd62929d6364dd32ac0600f2"},"previous_names":[],"tags_count":39,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JaneliaSciComp%2FJRCLUST","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JaneliaSciComp%2FJRCLUST/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JaneliaSciComp%2FJRCLUST/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JaneliaSciComp%2FJRCLUST/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JaneliaSciComp","download_url":"https://codeload.github.com/JaneliaSciComp/JRCLUST/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":237843727,"owners_count":19375192,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cluster","rocket","sorting","spike"],"created_at":"2024-09-24T19:51:22.858Z","updated_at":"2025-10-23T15:30:16.428Z","avatar_url":"https://github.com/JaneliaSciComp.png","language":"MATLAB","funding_links":[],"categories":[],"sub_categories":[],"readme":"# JRCLUST\n\n## Note\n\n**JRCLUST is no longer being actively maintained.**\nIf you still want to use JRCLUST, we recommend using the [latest release](https://github.com/JaneliaSciComp/JRCLUST/releases/tag/v4.1.0) or cloning from `main`, rather than `master`.\n\nJRCLUST is a scalable and customizable package for spike sorting on [high-density silicon probes](https://www.nature.com/articles/nature24636).\nIt is written in MATLAB and CUDA.\n\nJRCLUST was originally developed by [James Jun](https://www.simonsfoundation.org/team/james-jun/).\n\n## Installing JRCLUST\n\nIf you'd like to\ntest the latest development code, you can [clone the\nrepository](https://help.github.com/articles/cloning-a-repository/) to\nyour computer. If you want to stay on a release, head to the [releases\npage](https://github.com/JaneliaSciComp/JRCLUST/releases) and download\nthe latest release.\n\nRun the following command in MATLAB (you may want to add it to your [startup\nscript](https://www.mathworks.com/help/matlab/ref/startup.html)):\n\n```matlab\naddpath('/path/to/JRCLUST');\n```\n\nYou may also need to recompile your CUDA codes if you're not on Windows.\nDo this with\n\n```matlab\njrclust.CUDA.compileCUDA();\n```\n\n## Questions?\n\nRead the documentation [here](https://jrclust.readthedocs.io/en/latest/index.html) and the original bioRxiv paper [here](https://www.biorxiv.org/content/early/2017/01/30/101030).\nStill have questions?\nVisit our [Gitter community](https://gitter.im/JRCLUST/community) and ask!\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjaneliascicomp%2Fjrclust","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fjaneliascicomp%2Fjrclust","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjaneliascicomp%2Fjrclust/lists"}