{"id":18963866,"url":"https://github.com/janeliascicomp/neuronbridge","last_synced_at":"2025-04-19T12:48:07.338Z","repository":{"id":38187423,"uuid":"257408159","full_name":"JaneliaSciComp/neuronbridge","owner":"JaneliaSciComp","description":"EM/LM neuron search","archived":false,"fork":false,"pushed_at":"2025-03-12T14:24:17.000Z","size":40300,"stargazers_count":4,"open_issues_count":11,"forks_count":1,"subscribers_count":6,"default_branch":"master","last_synced_at":"2025-03-29T08:02:08.714Z","etag":null,"topics":["aws","drosophila","janelia","neuroimaging","neurons","neuroscience"],"latest_commit_sha":null,"homepage":"https://neuronbridge.janelia.org","language":"JavaScript","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/JaneliaSciComp.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2020-04-20T21:29:13.000Z","updated_at":"2025-02-06T19:12:08.000Z","dependencies_parsed_at":"2023-02-15T13:15:46.730Z","dependency_job_id":"ab5743a5-c921-4d5a-b776-2f5212572cd5","html_url":"https://github.com/JaneliaSciComp/neuronbridge","commit_stats":null,"previous_names":[],"tags_count":81,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JaneliaSciComp%2Fneuronbridge","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JaneliaSciComp%2Fneuronbridge/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JaneliaSciComp%2Fneuronbridge/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/JaneliaSciComp%2Fneuronbridge/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/JaneliaSciComp","download_url":"https://codeload.github.com/JaneliaSciComp/neuronbridge/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":249201117,"owners_count":21229004,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["aws","drosophila","janelia","neuroimaging","neurons","neuroscience"],"created_at":"2024-11-08T14:22:08.790Z","updated_at":"2025-04-16T05:31:27.928Z","avatar_url":"https://github.com/JaneliaSciComp.png","language":"JavaScript","readme":"# NeuronBridge\n\n[![DOI](https://zenodo.org/badge/257408159.svg)](https://zenodo.org/badge/latestdoi/257408159)\n[![Node.js CI](https://github.com/JaneliaSciComp/neuronbridge/actions/workflows/node.js.yml/badge.svg)](https://github.com/JaneliaSciComp/neuronbridge/actions/workflows/node.js.yml)\n[![bioRxiv](https://img.shields.io/badge/bioRxiv-10.1101%2F2022.07.20.500311%20-red)](https://www.biorxiv.org/content/10.1101/2022.07.20.500311v1)\n[![Follow on Twitter](http://img.shields.io/badge/twitter-%40NeuronBridge-1DA1F2?labelColor=000000\u0026logo=twitter)](https://twitter.com/NeuronBridge)\n\n\u003cp align=\"center\" style=\"background:white\"\u003e\n  \u003cimg src=\"https://github.com/JaneliaSciComp/neuronbridge/blob/master/assets/neuronbridge_logo_light_white_background.gif\" alt=\"NeuronBridge logo\"/\u003e\n\u003c/p\u003e\n\nNeuronBridge is a web-based service for neuron matching and searching in _Drosophila melanogaster_. It indexes large data sets of LM and EM imagery to enable finding similar neurons across modalities and data sets. The software is described in [this paper](https://doi.org/10.1186/s12859-024-05732-7).\n\n[![Janelia's production instance of NeuronBridge](https://img.shields.io/static/v1?style=for-the-badge\u0026logo=\u0026label=\u0026message=View%20Production%20Site\u0026color=008B94)](https://neuronbridge.janelia.org/)\n\n## Source Code\n\nThis repository contains the web client. Other related repositories:\n\n* [neuronbridge-services](https://github.com/JaneliaSciComp/neuronbridge-services) - Backend implementation\n* [neuronbridge-aligners](https://github.com/JaneliaSciComp/neuronbridge-aligners) - Aligner implementation\n* [neuronbridge-precompute](https://github.com/JaneliaSciComp/neuronbridge-precompute) - Precompute scripts\n* [neuronbridge-python](https://github.com/JaneliaSciComp/neuronbridge-python) - Python API\n* [neuronbridge-vol-viewer](https://github.com/JaneliaSciComp/neuronbridge-vol-viewer) - Web-based 3D Volume Viewer\n* [colormipsearch](https://github.com/JaneliaSciComp/colormipsearch) - Color Depth MIP Search Algorithms\n\n\n## Data Availability\n\nThe imagery and metadata are stored on AWS S3, and are available for browsing and reuse, subject to the license agreement:\n\n* [Color Depth MIPS](https://open.quiltdata.com/b/janelia-flylight-color-depth)\n* [Precomputed CDM match metadata](https://open.quiltdata.com/b/janelia-neuronbridge-data-prod)\n* [Precomputed PPPM match metadata](https://open.quiltdata.com/b/janelia-ppp-match-prod)\n\n## Release Notes\n\nView the [Release Notes](public/RELEASENOTES.md) for a history of changes to the web client.\n\n## Development\n\nRead the [Developer's Guide](docs/Development.md) for more information about developing and deploying this service.\n\n## License\n\nAll code related to NeuronBridge is made available under the [3-Clause BSD License](LICENSE.md).\n\nAll data served by the application is made available under the [Creative Commons Attribution 4.0 International License](https://creativecommons.org/licenses/by/4.0/).\n\nStudies and publications that use this software should cite [doi:10.1101/2022.07.20.500311](\u003chttps://doi.org/10.1101/2022.07.20.500311\u003e).\n","funding_links":[],"categories":[],"sub_categories":[],"project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjaneliascicomp%2Fneuronbridge","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fjaneliascicomp%2Fneuronbridge","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjaneliascicomp%2Fneuronbridge/lists"}