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Integrated with a simulation-based inference generative deep learning model.*\n\n# Table of contents\n\n- [DeepRootGen](#deeprootgen)\n- [Table of contents](#table-of-contents)\n- [Introduction](#introduction)\n- [Data Schema](#data-schema)\n- [Contacts](#contacts)\n \n# Introduction\n\nThis repository contains an implementation of a simulation model for generating a synthetic root system architecture, for the estimation of root parameters as informed by observational data collected from the field.\n\n# Data Schema\n\nThe primary purpose of DeepRootGen is to output a synthetic root system into a tabular data format. The tabular data are composed of several columns:\n\n| Column | Type | Description |\n| ------------ | ---------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |\n| id | Discrete | A unique ID for each row. |\n| plant_id | Discrete | A unique ID for each plant. |\n| organ_id | Discrete | A unique ID for each root. |\n| order | Discrete | The plant order. A first order root grows from the plant base, second order roots emerge from first order roots, third order roots emerge from second order roots, and so on. |\n| root_type | Discrete | The root type classification. Can be one of 1 = Structural Root or 2 = Fine Root. |\n| segment_rank | Discrete | The rank number for each root segment. A small rank refers to segments that are close to the root base, while a large rank refers to roots that are near the root apex. |\n| parent | Discrete | The parent organ of the root segment. The parent node of the organ within the GroIMP graph. Used by the XEG reader to recursively import the synthetic root data. |\n| coordinates | Continuous | The combined 3D coordinates (x, y, and z) of each root segment. |\n| diameter | Continuous | The root segment diameter. |\n| length | Continuous | The root segment length. |\n| x | Continuous | The x coordinate of the root segment. |\n| y | Continuous | The y coordinate of the root segment. |\n| z | Continuous | The z coordinate of the root segment. |\n\n# Contacts\n\n- DeepRootGen Developer: James Bristow \n- DeepRootGen Project Supervisor: Junqi Zhu\n- Crop System Modeller: Xiumei Yang \n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjbris%2Fdeep-root-gen","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fjbris%2Fdeep-root-gen","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjbris%2Fdeep-root-gen/lists"}