{"id":15893075,"url":"https://github.com/jeffreyevans/genetit","last_synced_at":"2025-10-15T18:05:14.363Z","repository":{"id":56936434,"uuid":"108581524","full_name":"jeffreyevans/GeNetIt","owner":"jeffreyevans","description":"R package for spatial graph-theoretic gravity modelling","archived":false,"fork":false,"pushed_at":"2023-06-14T22:26:19.000Z","size":8225,"stargazers_count":8,"open_issues_count":1,"forks_count":2,"subscribers_count":3,"default_branch":"master","last_synced_at":"2024-04-29T02:21:05.285Z","etag":null,"topics":["cran","landscape-genetics","r","r-package","r-spatial","rstats","spatial","statistics"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/jeffreyevans.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2017-10-27T18:35:22.000Z","updated_at":"2024-04-24T02:05:23.000Z","dependencies_parsed_at":"2023-01-23T08:01:01.884Z","dependency_job_id":"3487515a-a4f9-4dbd-ae21-46b52b2d26f3","html_url":"https://github.com/jeffreyevans/GeNetIt","commit_stats":{"total_commits":71,"total_committers":1,"mean_commits":71.0,"dds":0.0,"last_synced_commit":"3bf2831beef2bdbd85f7d75b901c191cb2b305e5"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jeffreyevans%2FGeNetIt","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jeffreyevans%2FGeNetIt/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jeffreyevans%2FGeNetIt/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jeffreyevans%2FGeNetIt/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/jeffreyevans","download_url":"https://codeload.github.com/jeffreyevans/GeNetIt/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":221766713,"owners_count":16877337,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"keywords":["cran","landscape-genetics","r","r-package","r-spatial","rstats","spatial","statistics"],"created_at":"2024-10-06T08:07:08.101Z","updated_at":"2025-10-15T18:05:14.301Z","avatar_url":"https://github.com/jeffreyevans.png","language":"R","funding_links":[],"categories":[],"sub_categories":[],"readme":"# GeNetIt (CRAN 0.1-6, development 0.1-7) \u003cimg src=\"man/figures/logo.png\" align=\"right\" height=\"132\" /\u003e\n\n[![CRAN\nstatus](http://www.r-pkg.org/badges/version/GeNetIt)](https://cran.r-project.org/package=GeNetIt)\n[![CRAN RStudio mirror\ndownloads](http://cranlogs.r-pkg.org/badges/grand-total/GeNetIt)](https://cran.r-project.org/package=GeNetIt)\n\nGeNetIt is an R package for spatial graph-theoretic gravity modeling. The model framework is applicable for \nother types of matrix-based spatial flow (from-to) problems. Includes functions for constructing spatial graphs, \nsampling, summarizing associated raster variables and building unconstrained and singly constrained \ngravity models following Murphy et al., (2010). \n\nAs of version 0.1-6 all support of raster (RasterLayer, RasterStack) and sp (SpatialPointsDataFrame) class objects  \nhas ended, replaced by terra (SpatRaster) and sf (sf POINT) classes.  \n\nYou can access a [full tutorial here](https://spatialr.s3.us-west-2.amazonaws.com/Gravity/GravityModel.html)\n\n# Available functions in GeNetIt 0.1-6 are:\n\n| `GeNetIt` Function           | Description                                                                             |\n|:-----------------------------|:----------------------------------------------------------------------------------------|\n| `adj.matrix`                 | Creates binary adjacency matrix of from-to (joins) structure of graph \n| `build.node.data`            | Build node data \n| `compare.models`             | Compare competing hypothesis (models)\n| `dmatrix.df`                 | Distance matrix to data.frame\n| `dps`                        | dps genetic distance matrix for Columbia spotted frog (Rana luteiventris)\n| `flow`                       | Convert distance matrix to flow (1-d)\n| `graph.metrics`              | Calculates a suite of metrics on the structure of the graph\n| `graph.statistics`           | Raster statistics for edges (lines) with buffer argument for multi-scale assessment\n| `gravity.es`                 | Effect size for a gravity model\n| `gravity`                    | Gravity model\n| `knn.graph`                  | K Nearest Neighbor or saturated Graph\n| `node.statistics`            | Raster statistics for nodes (points)\n| `plot.gravity`               | plot generic for a gravity model object\n| `predict.gravity`            | predict generic gravity model\n| `print.gravity`              | print generic gravity model\n| `ralu.model`                 | Columbia spotted frog (Rana luteiventris) data for specifying gravity model. Note, the data.frame is already log transformed.\n| `ralu.site`                  | Subset of site-level spatial point data for Columbia spotted frog (Rana luteiventris)\n| `rasters`                    | Subset of raster data for Columbia spotted frog (Rana luteiventris)\n| `summary.gravity`            | summary generic for gravity model objects\n| `area.graph.statistics`      | Depreciated, please use graph.statistics with buffer argument\n\t\t\n**Bugs**: Users are encouraged to report bugs here. Go to [issues](https://github.com/jeffreyevans/GeNetIt/issues) in the menu above, and press new issue to start a new bug report, documentation correction or feature request. You can direct questions to \u003cjeffrey_evans@tnc.org\u003e.\n\n**To install `GeNetIt` in R use install.packages() to download curent stable release from CRAN** \n\n**or, for the development version, run the following (requires the remotes package):**\n`remotes::install_github(\"jeffreyevans/GeNetIt\")`\n","project_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjeffreyevans%2Fgenetit","html_url":"https://awesome.ecosyste.ms/projects/github.com%2Fjeffreyevans%2Fgenetit","lists_url":"https://awesome.ecosyste.ms/api/v1/projects/github.com%2Fjeffreyevans%2Fgenetit/lists"}